Bash command to install bwa, samtools, picard !
...metadata (repodata.json): done Solving environment: - The environment i...done ## Package Plan ## environment location: /data/sata_d...metadata (repodata.json): done Solving environment: done ## Pac...metadata (repodata.json): done Solving environment: done ## Pac...1568 days ago
Bash command to install GATK, Bedtools and SnpEff !
...metadata (repodata.json): done Solving environment: done ## Package Pl...36h96ca727_0 159 KB r-viridislite-0.3.0 | r3...4::r-utf8-1.1.4-r36h96ca727_0 r-viridislite pkgs/r/noarch::...metadata (repodata.json): done Solving environment: done ## Pac...1568 days ago
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Perl script to delete the adjacent repeats !
/usr/bin/perl #Mostly the interview question for bioinfomatician ! #Write a code to delete the adjacent repeated character .... $string='ATTTTTTGGC'; # This should be conver...1564 days ago
Install Nucmer on Linux / Ubuntu
...d64 3.23+dfsg-3 [811 kB] Fetched 1,213 kB in 2s (672 kB/s) Selecting previously unselected package gawk....d1_amd64.deb ... Unpacking gawk (1:4.1.4+dfsg-1build1) ... Selecting previously unselected package mumme...1563 days ago
Install python pip and numpy on Linux / Ubuntu
...Selecting previously unselected package libex...b ... Unpacking libexpat1-dev:amd64 (2.2.5-3ubuntu0.2) ... Selecting previously unselected package libpy...1563 days ago
Install miniasm in Linux / Ubuntu
...ap amd64 0.2-3 [26.6 kB] Fetched 55.8 kB in 1s (40.7 kB/s) Selecting previously unselected package minia....2+dfsg-2_amd64.deb ... Unpacking miniasm (0.2+dfsg-2) ... Selecting previously unselected package minim...1563 days ago