BOL: Bash script to run Busco2 !

BioScripts
Jit
Bash script to run Busco2 !

Bash script to run Busco2 !

By Jit 2340 days ago

#!/bin/bash

#set the path
export PATH=$PATH:/home/urbe/Tools/augustus-3.2.3/bin
export PATH=$PATH:/home/urbe/Tools/augustus-3.2.3/scripts

export AUGUSTUS_CONFIG_PATH=/home/urbe/Tools/augustus-3.2.3/config

#run BUSCO
python BUSCO.py -i /media/urbe/MyDDrive/longMIRA_canuCorrect_sspaceLong/GRAAL_Haploid/adineta_p_lvl6/genome_CORRECTED2.fasta -c 30 -l metazoa_odb9 -o GRAALHaploid_BUSCO -m genome -f

#Plot BUSCO

python BUSCO_plot.py -wd GRAALHaploid_BUSCO

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Bash script to run Busco2 !