#!/bin/bash
#set the path
export PATH=$PATH:/home/urbe/Tools/augustus-3.2.3/bin
export PATH=$PATH:/home/urbe/Tools/augustus-3.2.3/scripts
export AUGUSTUS_CONFIG_PATH=/home/urbe/Tools/augustus-3.2.3/config
#run BUSCO
python BUSCO.py -i /media/urbe/MyDDrive/longMIRA_canuCorrect_sspaceLong/GRAAL_Haploid/adineta_p_lvl6/genome_CORRECTED2.fasta -c 30 -l metazoa_odb9 -o GRAALHaploid_BUSCO -m genome -f
#Plot BUSCO
python BUSCO_plot.py -wd GRAALHaploid_BUSCO
