Jit
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Finding Kmers from fasta sequence file
By Jit 1979 days ago
Save it in sample.fa
>test
TAATGCCATGGGATGTT
jellyfish count -m 3 -s 100000 sample.fa -o sample.jf
jellyfish dump -c sample.jf
It return
TGT 1
GAT 1
GGG 1
GGA 1
CAT 1
TGC 1
TAA 1
GCC 1
CCA 1
GTT 1
TGG 1
ATG 3
AAT 1
