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Shruti Paniwala
@shruti
Shruti Paniwala
A Bioinformatician
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The Wire
Shruti Paniwala
Shruti Paniwala's wire posts
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
3020 days ago
Rename the fasta name perl -ane 'if(/\>/){$a++;
@foo
= split /\s+/;$_ = join '_',
@foo
; print "$_\n"}else{print;}' your.fasta > new.fa
#PerlTrick
#PerlOneliner
#Perl
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
3028 days ago
Little correction, I guess you mean concatenate many files: $ for a in *.txt ; do cat $a >> newFile ; done
#Linux
#Tricks
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
3042 days ago
Genome basic stats
http:/
/
www.cbs.dtu.dk/
courses/
genomics_course/
Day3.pdf
#Genome
#Stats
#Plot
#R
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
3049 days ago
Determine your current Java version in Linux OS: java -Xmx90m -version
#Java
#Linux
#Version
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
3104 days ago
#Extract
#tabbed
info from
#BAM
file with samtools: samtools view test.bam|awk '{print $1 "\t" $2 "\t" $3 "\t" $4 "\t" $4+length($10)-1}' > file.xls
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
3112 days ago
Grep all the processor in Linux system $ grep "^processor" /proc/cpuinfo | tail -n 1 | awk '{print $3}'
#Grep
#OS
#Linux
#Processor
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
3112 days ago
Update NCBI BLAST database in your local Linux system $ update_blastdb --passive --decompress nr nt
#BLAST
#Updates
#NT
#NR
#Linux
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
3281 days ago
#Professor
#Jobs
at
#University
of
#North
#Bengal
http:/
/
www.nbu.ac.in/
Fresh_Vacancies_in_teaching_posts%281%29.pdf
#Teaching
#Faculty
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
3287 days ago
13 PhD positions :
#Cologne
,
#Germany
http:/
/
www.nature.com/
naturejobs/
science/
jobs/
557351-13-phd-positions
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
3391 days ago
Bioinformatics studentship and traineeship at Gargi collage
http:/
/
gargi.du.ac.in/
uploads/
ngrey/
News/
Gargi_Advt_BIF_2015.pdf
#Studentship
#Traineeship
#Gargi
#Delhi
#Bioinformatics
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
3445 days ago
RA Bioinformatics at
#ACBR
#NewDelhi
http:/
/
www.acbrdu.edu/
pdf/
15072015_Advt.pdf
#WalkIn
#Bioinformatics
#Opportunity
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
3635 days ago
What Makes a Protein Sequence a Prion?
http:/
/
journals.plos.org/
ploscompbiol/
article?id=10.1371/
journal.pcbi.1004013
#Protein
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
3635 days ago
Advancements and Challenges in Computational Biology
http:/
/
journals.plos.org/
ploscompbiol/
article?id=10.1371/
journal.pcbi.1004053
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
3777 days ago
AliView: a fast and lightweight alignment viewer and editor for large data sets.
http:/
/
bioinformatics.oxfordjournals.org/
content/
early/
2014/
08/
05/
bioinformatics.btu531.short
#AliView
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
3777 days ago
googleVis 0.5.5 released
http:/
/
www.r-bloggers.com/
googlevis-0-5-5-released/
#GoogleVis
#R
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