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The Wire
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Thread
Radha Agarkar
@radhaagarkar
Thread
By
Radha Agarkar
3019 days ago
Extract sequence by using Ids file (assuming one ids in a line): perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if
@ARGV
' ids.file fasta.file
#PerlTricks
#PerlOneliner
#Perl
#Extract
#Ids
#
By Radha Agarkar 3019 days agoExtract sequence by using Ids file (assuming one ids in a line): perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @ARGV' ids.file fasta.file #PerlTricks #PerlOneliner #Perl #Extract #Ids #