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Radha Agarkar
@radhaagarkar
Radha Agarkar
A Bioinformatician
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The Wire
Radha Agarkar
Radha Agarkar's wire posts
Radha Agarkar
@radhaagarkar
Thread
By
Radha Agarkar
2812 days ago
Open source tools for videos making
https:/
/
www.openshot.org/
#Open
#Videos
Radha Agarkar
@radhaagarkar
Thread
By
Radha Agarkar
3209 days ago
Remove the fasta with zero size: awk 'BEGIN {RS = ">" ; FS = "\n" ; ORS = ""} $2 {print ">"$0}' input.fas > output.fas
#fasta
#remove
Radha Agarkar
@radhaagarkar
Thread
By
Radha Agarkar
3374 days ago
Understanding BitScore
https:/
/
www.ctu.edu.vn/
~dvxe/
Bioinformatic%20course/
lectures/
scores.pdf
#Blast
#Bit
#BitScore
Radha Agarkar
@radhaagarkar
Thread
By
Radha Agarkar
3603 days ago
Bioinformatics scientist at NIAB
http:/
/
www.niab.org.in/
Notifications/
Advt_3_2016/
Notification_3_2016.pdf
#Scientist
#Nabi
#India
Radha Agarkar
@radhaagarkar
Thread
By
Radha Agarkar
3652 days ago
Extract sequence by using Ids file (assuming one ids in a line): perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if
@ARGV
' ids.file fasta.file
#PerlTricks
#PerlOneliner
#Perl
#Extract
#Ids
#
Radha Agarkar
@radhaagarkar
Thread
By
Radha Agarkar
3652 days ago
Extract fasta sequence by Ids: perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file
#Perl
#PerlOneliner
#PerlTrick
#Extract
#Ids
#Fasta
Radha Agarkar
@radhaagarkar
Thread
By
Radha Agarkar
3769 days ago
Web BLAST
ftp:/
/
ftp.ncbi.nlm.nih.gov/
blast/
documents/
web_blast.pl
#BLAST
#Web
#Online
Radha Agarkar
@radhaagarkar
Thread
By
Radha Agarkar
3835 days ago
Drag and drop programming language
http:/
/
snap.berkeley.edu/
#Programming
#Language
Radha Agarkar
@radhaagarkar
Thread
By
Radha Agarkar
4075 days ago
Bioinformatics WalkIn at NIBMG
http:/
/
www.nibmg.ac.in/
academic/
WALK-IN-ADVT-0815.pdf
#WalkIn
#Bioinforamtics
#Jobs
#Opportunity
#NIBMG
Radha Agarkar
@radhaagarkar
Thread
By
Radha Agarkar
4108 days ago
Check out Bioinformatics opening at
http:/
/
gujaratgenomics.in/
recruit/
#Gujrat
#Bioinformatics
#GSBTM
Radha Agarkar
@radhaagarkar
Thread
By
Radha Agarkar
4413 days ago
Bioinformatics Infrastructure Facility (BIF)
http:/
/
btisnet.gov.in/
bif.asp
#BIF
#India
#Bioinformatics
Radha Agarkar
@radhaagarkar
Thread
By
Radha Agarkar
4510 days ago
A unique bioinformatics server
http:/
/
www.biorxiv.org/
collection/
bioinformatics
Radha Agarkar
@radhaagarkar
Thread
By
Radha Agarkar
4511 days ago
Webinar
http:/
/
webinars.sciencemag.org/
webinar/
archive/
importance-bioinformatics-ngs
#NGS
#Webinar
Radha Agarkar
@radhaagarkar
Thread
By
Radha Agarkar
4679 days ago
Landmarks in genomics
http:/
/
www.nature.com/
nature/
journal/
v422/
n6934/
pdf/
timeline_01626.pdf
#Genomics
#Landmarks