Results for "Alignment"

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  • NCBI PSI-BLAST Tutorial

    http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.

    Tags: PSI Blast, BLAST, NCBI, Alignment, Search, Sequence

    1428 days ago

  • Dynamic Programming Alignment

    lecture 9, Chem. C100, Spring 2013, UCLA

    Tags: Dynamic Programming, Alignment, Bioinformatics, Algorithms

    1428 days ago

  • RAMICS substantially outperforms other mapping approaches for alignment of coding DNA to reference sequences. http://hiv.sanbi.ac.za/tools#/ramics #Tools #Alignment #NGS #RAMICS

    Tags: Tools, Alignment, NGS, RAMICS

    1123 days ago

  • MafFilter: a highly flexible and extensible multiple genome alignment files processor http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3904536/ #MultipleGenomeAlignment #MAF #Genome #Alignment

    Tags: MultipleGenomeAlignment, MAF, Genome, Alignment

    1073 days ago

  • Mercator that constructs orthology maps between multiple whole genomes https://www.biostat.wisc.edu/~cdewey/mercator/ #Synteny #Orthology #Map #Construction #Alignment

    Tags: Synteny, Orthology, Map, Construction, Alignment

    1060 days ago

  • Genome alignment with graph data structures: a comparison http://www.biomedcentral.com/1471-2105/15/99 #Genome #Alignment #Data #Graph

    Tags: Genome, Alignment, Data, Graph

    1051 days ago

  • CYNTENATOR: Progressive Gene Order Alignment of 17 Vertebrate Genomes http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0008861#pone-0008861-g003 #Alignment #CYNTENATOR #Genome

    Tags: Alignment, CYNTENATOR, Genome

    1039 days ago

  • MAP2: multiple alignment of syntenic genomic sequences http://nar.oxfordjournals.org/content/33/1/162.full #Alignment #Synteny #Sequence

    Tags: Alignment, Synteny, Sequence

    1033 days ago

  • Alignathon: A collaborative competition to assess the state of the art in whole genome sequence alignment. http://compbio.soe.ucsc.edu/alignathon/index.html #Alignment #Simulation #Evolver

    Tags: Alignment, Simulation, Evolver

    995 days ago