Results for "BroadInstitute"
Bookmarks
Next Generation Sequencing (NGS) Tutorials
...ysis of next-generation sequencing data. http://www.ncbi.nlm.nih.gov/pubmed/23657089 GATK: a Toolkit for Genome Analysis http://www.broadinstitute.org/gatk/ Metagenomics:http:...3479 days ago
Integrative Genomics Viewer (IGV) tutorial
...that employs a reference genome, including how reads from a dataset are mapped, gene annotations, and predicted genetic variants. http://www.broadinstitute.org/igv/...3576 days ago
- ...substitution events Gap filling Identification of local misassemblies, including optional opening of new gaps More at https://github.com/broadinstitute/pilon/wiki...
3000 days ago
- ...diverged sequences; and SLAP, a context-sensitive local aligner for diverged sequences with large gaps. Access Spines here. http://www.broadinstitute.org/science/programs/genome-b...
2999 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of transcrip...2956 days ago
- Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. These file formats are defined in the...
2919 days ago
- ...DISCOVAR de novo can generate de novo assemblies for both large and small genomes. It currently does not call variants. More at https://www.broadinstitute.org/software/discovar/blog/?p...
2930 days ago
MEDEA: Comparative Genomic Visualization with Adobe Flash
...power of the human visual system to detect trends and spot outliers is necessary in such large and complex data sets. More at http://www.broadinstitute.org/annotation/medea/2922 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the conse...2905 days ago
- Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad Institute. It provides basic data structures for effic...
2706 days ago
