Bioinformatics Algorithm Demonstrations and Tutorials
...trated include two approaches to approximate string matching (dynamic programming and Shift-AND numeric approximate matching), Hierarchical Clustering (used in phylogenetic studies...3695 days ago
7th International Conference on Bioinformatics and Computational Biology (BICoB)
...ding, alternative splicing, EST analysis and comparative genomics. Sequence analysis: Multiple sequence alignment, sequence search and clustering, function prediction, motif d...3489 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...owser RNA-Seq De novo transcript discovery and differential analysis with Cufflinks Differential expression analysis with R/Bioconductor Clustering of large expression datasets...2922 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...data (sequencing technologies, low-coverage and exome) in the 1000 Genomes Project. To provide highly accurate alignments, MOSAIK employs a hash clustering strategy coupled with the Smi...2897 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
...hese do not scale to arbitrarily large genomes and arbitrarily large phylogenetic distances. Results: We present Cnidaria, a practical tool for clustering genomic and transcriptomic da...2870 days ago
Bioinformatics tools and software
...rders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than CLUSTALW. UPARSE >OTU clustering for 16S and other marker gene...2852 days ago
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CONCOCT: Clustering cONtigs with COverage and ComposiTion
A program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads. Warn...2608 days ago