Results for "Computational Biology"
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You are requested to please bookmark collection of bioinformatics tools, scripts, codes that can be pieced together in a very easy and flexible manner to perform both simple and complex bioinformatics tasks. The next-generation sequencing included whole genome sequencing(WGS), transcriptome sequ...Tags: Bioinformatics, Computational Biology, Education, Solution, Study, Script, Perl, Python, R, Code
3225 days ago
Bioinformatics Made Easy Search: Bioinformatics tools and run genomic analysis in the cloud
InsideDNA makes hundreds of bioinformatics tools immediately available to run via an easy-to-use web interface and allows an accurate search across all functions, tools and pipelines. With InsideDNA, you can upload and store your own genomic/genetic datasets in a limitless cloud space, and insta...Tags: Bioinformatics, Computational Biology, Education, Solution, Puzzle, Study, Script, Cloud, Server, Work, InsideDNA
3172 days ago
Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such reference set that facilitates comprehensive and reproducible analysis of chordate genome data. Ensembl computes pairwise and multiple whole-genome alignments from which large-scale synteny, per-base conservation scores and constrained ele...Tags: Bioinformatics, Computational Biology, Genome, RAD-Seq, NGS, Comparative Genomics, Resources, EnsEMBL
2979 days ago
- MAKER is a portable and easily configurable genome annotation pipeline.Its purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create genome databases. MAKER identifies repeats, aligns ESTs and proteins to a genome, produces ab-ini...
Tags: Bioinformatics, Computational Biology, Education, Cancer, Research, MAKER, Genome, Annotation, Pipeline, NGS, Assembly
3000 days ago
- Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs More at http://busco.ezlab.org/
Tags: Bioinformatics, Computational Biology, Education, Cancer, Research, BUSCO, Genome, Annotation, Pipeline, NGS, Assembly, Orthologs
3000 days ago
- RATT is software to transfer annotation from a reference (annotated) genome to an unannotated query genome. It was first developed to transfer annotations between different genome assembly versions. However, it can also transfer annotations between strains and even different species, like Plasmo...
Tags: Bioinformatics, Computational Biology, Education, Cancer, Research, RATT, Genome, Annotation, Pipeline, NGS, Assembly
3000 days ago
- Tools to create plots showing N-statistics for genome assemblies More at https://github.com/dentearl/n50PlottingTools
Tags: Bioinformatics, Computational Biology, Education, Plot, N50, NGS
2999 days ago
- Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly. More at https://github.com/aaronwolen/liftover https://www.bioconductor.org/help/workflows/liftOver/
Tags: Bioinformatics, Computational Biology, Education, liftover, N50, NGS, Assembly, Genomics
2999 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36) <> hg19 (GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)). It supports most commonly used file formats including SAM/BAM, Wiggle/BigWig,...
Tags: Bioinformatics, Computational Biology, Education, CrossMap, N50, NGS, Assembly, Genomics
2999 days ago
- Pilon is a software tool which can be used to: Automatically improve draft assemblies Find variation among strains, including large event detection Pilon requires as input a FASTA file of the genome along with one or more BAM files of reads aligned to the input FASTA file. Pilon uses read ...
Tags: Bioinformatics, Computational Biology, Education, Pilon, N50, NGS, Assembly, Genomics
2999 days ago
