Results for "Encode"
Bookmarks
Public Databases for Bioinformatics !
...should store common data here e.g. genomes and indexes, annotations, ENCODE data if you dont want this...p.close() print "FINISHED" For use case 1 we obtained the following ENCODE and ROADMAP datasets htt...1130 days ago
Encode sequencing data freely available to download and use for academic means
In Encode, regulatory elements investigated via DNA hypersensitivity assays, assay...ollowed by sequencing (ChIP-Seq). More information: https://genome.ucsc.edu/ENCODE/pilot.html3696 days ago
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Pages
Awesome perl frameworks, libraries and software - PART 3
...utocomplete is a Perl module which gives you frequency (and optionally geolocation)-sensitive autocomplete suggestions based on your data audreyt/encode-hanconvert - [Perl] Modu...2485 days ago
Top-level pages
List of Bioinformatics Software Tools for Next Generation Sequencing
...ly (and family ID) each variant hits, variant genomic location and coding effect (based on snpEff), loss-of-function mutation annotation, selected ENCODE annotation, allele frequency...2899 days ago
Genome Assembly Tools and Software - PART1 !!
...ment to an accuracy comparable to conventional mapping based pipelines (see evaluation in the tex directory). The assembly does not only encode SNPs and short INDELs, but al...2676 days ago
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News
- ...of PR#16198.) The default method of image() has an explicit check for a numeric or logical matrix (which was always required). URLencode() will not by default encode further URLs which appear to...
3296 days ago
- Sequencing By Xpansion (SBX) is a DNA sequencing method that uses a simple biochemical reaction to encode the sequence of a DNA molecule into a highly measurable surrogate called an X...
3235 days ago
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Opportunity posts
- ...iversity of Oslo, Norway Topics: Tools and technologies for integrative bioinformatics Metagenomics Comparative genomics and phylogeny Post-ENCODE bioinformatics Gene regulati...
3887 days ago
ResearchLabs posts
- ...otation in genomic sequences. Our group also actively participates in the analysis of many eukaryotic genomes and it in involved in the NIH-funded ENCODE project. Furthermore we are m...
3524 days ago
MIT Computational Biology Group
...n with the Broad Institute and the Computational and Systems Biology initiative (CSBi) at MIT, our participation in the Epigenome Roadmap, ENCODE, and modENCODE consortia, and by several oth...3416 days ago
Video
The Story of You: ENCODE and the human genome
...ow it's used to make different types of cells and different people. The ENCODE project, as it's called, is the latest chapter in the story of you. To read the ENCODE research papers and more, vis...3897 days ago
Bio-Scripts
- (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1207 days ago
- ...JSON::Parse XML::Parser XML::Simple LWP LWP::Simple LWP::Protocol::https Archive::Extract Archive::Tar Archive::Zip CGI DBI Time::HiRes DBD::mysql Encode File::Copy::Recursive Perl::O...
2135 days ago
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Tags
The Story of You: ENCODE and the human genome
Ever since a monk called Mendel started breeding pea plants we've been learning about our genomes. In 1953, Watson, Crick and Franklin described the structure of the molecule that makes up our genomes: the DNA double helix. Then, in 2001, scientists wrote down the entire 3-billion letter code con...Tags: ENCODE, Genome, Non-coding DNA, DNA, Animation
3897 days ago
- 14th annual conference in Bioinformatics Date : June 10-13 Organizers: The Society for Bioinformatics in Northern European countries (SocBiN) and the Norwegian Bioinformatics Platform / ELIXIR.NO Venue: Department of Informatics, University of Oslo, Norway Topics: Tools and technolo...
Tags: bioinformatics, genomics, metagenomics, phylogeny, gene expression, cancer, marine genomics, ENCODE, conference
3887 days ago
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Comments
Comment on "Comparative genomics educational material and papers bookmarks"
...lysis of the genomes of Drosophila melanogaster, Caenorhabditis elegans, and Saccharomyces cerevisiae—and the proteins they are predicted to encode—was undertaken in the c...2724 days ago
Comment on "Encode sequencing data freely available to download and use for academic means"
User can also find some useful ENCODE data at http://www.gencodegenes.org/releases/17.html3672 days ago
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