Results for "FASTA"
Blogs
Computer simulation of genetic mechanism !!
...tool that uses known or theorized variation frequency, per a given fragment size and grouped by GC content across a genome to model new genomes in FASTA format while tracking applied...2966 days ago
- ...phylogenetic tree. It is designed for large-scale studies, including simulation of multiple replicates and outputs sequences into NEXUS, MEGA, or FASTA formats. MySSP has a fairly s...
2521 days ago
BBTools for bioinformatician !
...ct.sh in=trimmed.fq out=counts.txt fastadump=f mincount=10 k=20 rcomp=...means Q0, which means N (in either fasta or fastq format). The BBMap p...Code: $ randomreads.sh ref=genome.fasta out=reads.fq len=100 reads=10...bbmap.sh in=reads.fq ref=reference.fasta nodisk covstats=stats.txt cov...2261 days ago
Basic command-line to run BLAST
....faa head human.1.protein.faa These are protein sequences in FASTA format. FASTA format is something many of y...hese files, called index files, must be in the same directory as the fasta file. blastp [-h] [-help] [...2235 days ago
- ...no-deprecated -m64 -g -O2 -MT Fasta_entry.o -MD -MP -MF .deps/Fasta_entry.Tpo -c -o Fasta_entry.o...^ mv -f .deps/fastaToKmerCoverageStats.Tpo .deps/...-c ./analysis/CreateIwormFastaBundle.cc -o obj/analysis/Crea...Installed Properly GraphFromFasta: has been Installed...
2124 days ago
Converting a VCF into a FASTA given some reference !
...;(lines 469-528) This script has been modified by others to convert InDels as well, e.g. this by David Eccles ./vcf2fq.pl -f <input.fasta> <all-site.vcf> >...2107 days ago
CANU genome assembly parameters !
...contain many files. The most interesting ones are: *.correctedReads.fasta.gz : file containing the...bly *.gfa : file containing the assembly graph by Canu *.contigs.fasta : file containing everyt...1936 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...mprove genetic disorder therapies. Similarly, pathogens study can lead to treatments for infectious diseases. Raw NGS dataReads can be saved as a Fasta file as text or in a FastQ fi...1195 days ago
Ancient whole genome duplication (WGD) detection tools !
....life.illinois.edu/ming/downloads/Spontaneum_genome/Sspon.v20190103.cds.fasta.gzwget http://www.life.illino...genes in the genome wgd mcl -n 20 --cds --mcl -s Sspon.v20190103.cds.fasta -o Sspon_cds.out Step 2 :...1146 days ago
