Results for "Genetic Code"
Bio-Scripts
Check if your coputer ready to use BioPerl
#!/usr/bin/perl use strict; use warnings; #bioperl example code use strict; use warnings; #make the bioperl module (class) accessible to your program use Bio::Seq; print"ok - ready to use Bio::Seq";2908 days ago
A multilayer perceptron (MLP) neural network in Perl
#!/usr/local/bin/perl -w #################################################### #MLP neural network in Perl Original source code by Phil Brierley #Translated...2907 days ago
Calculate ATGC percentage in parallel with perl
#!/usr/bin/perl use strict; use Parallel::ForkManager; use Bio::Seq...llback for when a child finishes up so we can # get it's exit code $pm->run_on_finish ( sub { my ($pid, $exit_code, $ident) = @_; #print...2647 days ago
Genetic Algorithms demonstration with word DNA in Perl
#!/usr/bin/perl -w # GA demonstration with word DNA (512 bits) use strict; use Data::Dumper; # individuals in th...biology by century come computer electronics evolution field fitting gene...2362 days ago
Reformat the file names with Perl
#!/usr/bin/perl use strict; use warnings; use File::Copy...#next if $. == 1; my ($lichenName, $name, $code) = split /\s+/, $line;...henName and defined $name and defined $code; $hash{$name}{sps}= $l...2327 days ago
Loop over with all files in a directory in bash
#!/bin/bash FILES=/media/ComparativeGenomics/ncbi-genomes-2017-11-13/* ref=/media/Co.../GCA_000196735.1_ASM19673v1_genomic.fna path=/home/urbe/Tools/SATSUMA/satsuma-code-0 for f in $FILES do if...2322 days ago
Create genome scaffolding with Perl
#!/usr/bin/perl use warnings; use strict; use English; use Pod::Usage; ## uses pod documentation in usage code use Getopt::Long qw(:config...2299 days ago
- You have to compile the code with a C++ compiler. TDM-GCC MinGW compiler which you can download from this link: https://sourceforge.net/projects/tdm-gcc/ Once you download and...
841 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl...inetaV2.fa"; #Ur target file my $satsumaLoc="/home/urbe/Tools/SATSUMA/satsuma-code-0"; # Location of ur SATSUMA...2131 days ago
- jitendra@jitendra-UNLOCK-INSTALL[SNP] wget https://...nalysis directory. ExtractIlluminaBarcodes (Picard) Tool determines the barcode for each read in an Illumina...tween mates and fix if needed. FixMisencodedBaseQualityReads...
2066 days ago
