Results for "Illumina"
Blogs
Computer simulation of genetic mechanism !!
...An R package for the Monte Carlo simulation of sequence evolution http://www.ebi.ac.uk/goldman-srv/phylosim/ pIRS Profile-based Illumina pair-end reads simulator http...2967 days ago
Structural variation: the hidden genomic treasure
...end mapping Link TIGER, transduction inference in germline genomes using short read data Link MANTA https://github.com/Illumina/manta SV-Bay https://gi...2694 days ago
Software and Tools to detect structure variation with long reads !!
...all Higher sensitivity for SV calls using tiled local assemblies across the entire genome instead of "signature" regions Genotyping of SVs with Illumina paired-end reads from WGS sam...2599 days ago
String graph based genome assembly software and tools !
...ASE to include scaffolding. 5. Fermi https://github.com/lh3/fermi/ Fermi is a de novo assembler with a particular focus on assembling Illumina short sequence reads fro...2320 days ago
BBTools for bioinformatician !
...2 to 2, since occasionally some Illumina software versions produces od...memory as possible. Removing illumina adapters (if exact adapters n...resent in the fastq read header (illumina) Code: $ demuxb...m, and the possibility of future Illumina platforms (HiSeq 3000 and 400...2262 days ago
10 NGS services companies around the globe !
... top 10 NGS services companies to look for – 1. Illumina, Inc. (U.S.) Illumina, Inc. was founded in 1998 and...ecular diagnostics laboratories and consumer genomics companies. Illumina, Inc. has its geographic pres...1251 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...length reads of 36 - 150 bp are produced for Illumina style short read sequencing....ommon read file format since this is what the Illumina sequencing pipeline creates....y quality into draft contigs. spades.py -1 illumina_R1.fastq.gz -2 illumina_R2.fa...1196 days ago
Frequently used bioinformatics tools for viral genome analysis !
...The Sequence Alignment/Map format and SAMtools. Li, H. et al. Bioinformatics 25, 2078-9 (2009). Trimmomatic: Trimmomatic: A flexible trimmer for Illumina Sequence Data. Bolger, A. M.,...1039 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignment...869 days ago
