1208 days ago
1208 days ago
2136 days ago
Python script to download covid genome !
...ez.efetch(db='nucleotide',id=nm, rettype = 'fasta', retmode= 'text').read().split("\n")[1:] allseq[nm] = ''.join(dna) import json with open("data/allseq.json", "w") as f: json.dump(all...1128 days ago
Install NCBI entrez-direct and esearch using conda !
$ conda install -c bioconda entrez-direct Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists. 13...1093 days ago
1046 days ago
1046 days ago
1046 days ago
1046 days ago
Install Minimap2 using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda minimap2 Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1046 days ago