Results for "KAT"
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Location: Kolkata3802 days ago
- Location: Katowice, Poland
2479 days ago
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KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
KAT is a suite of tools that analyse jelly...owing tools are currently available in KAT: hist: Create an histogram...produced either by jellyfish-histo or kat-histo. spectra-mx: Creates a...ced by the "comp". In addition, KAT contains a python script for...1972 days ago
Bio-Scripts
- ...added / updated specs: - kat The following packages w...6.2 MB bioconda kat-2.0.8 |...linux-64::jemalloc-4.5.0-0 kat bioconda/linux...#################### | 100% kat-2.0.8 | 7.5 MB...
1037 days ago
- #!/bin/bash #Counting k-mers for different k echo "k,unique,distinct,total" for k in {1..15}; do kat hist -o phiX_$k.hist -m $k phiX.fasta >/dev/null 2>&1 egrep -v '^#' phiX_$k.hist|awk '{if ($1==1) u=$2; d+=$2; t+=$2*$1;}\ END{print "'$k',"u","d","t}' done
785 days ago
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KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts. The following tools are currently available in KAT: hist: Create an histogram of k-mer occurrences from a sequence file. Adds metadata in output for easy plotting. gcp: K-mer GC Pr...Tags: KAT, K-mer, analysis, toolkit, quality, control, NGS, datasets, genome, assemblies
1972 days ago
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Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
Using KAT again (You will need the modules: KAT/2.1.1 and gnuplot/4.6.5) – we can plot the kmer con...ads_R2.fastq.gz >> combined.fastq We will now use kat comp to create a kmer co...1328 days ago
