2930 days ago
YASS :: genomic similarity search tool
...produces local pairwise alignments). Like most of the heuristic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER, BLASTZ/LASTZ, LAST ...), YASS uses seeds t...2916 days ago
YASRA: Reference based assembler
...apping reads to reference genomes makes use of LASTZ (Harris et al), a pairwise sequence aligner compatible with BLASTZ. Special scoring sets were de...ed version and http://www.bx.psu.edu/~rsharris/lastz/newer for newer version) for...2613 days ago
parallelLastz: Lastz with multi-threads support.
Running Lastz (https://github.com/lastz/lastz) in parallel mode. This program is for..., and use almost equal memory as the original lastz program. This is useful when...The program is an extension on the original lastz program which was written by...1343 days ago