Results for "Long"
Users
About me: ...is a registered and affiliated organization by the government of India for research & development, higher education including health care. Our long term goal is to develop perso...3398 days ago
- About me: ...is a registered and affiliated organization by the government of India for research & development, higher education including health care. Our long term goal is to develop perso...
3394 days ago
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Blogs
Five unique traits of effective computational biologist
...solution. Learn to perform root cause analysis, learn enough about the underlying system to look for other clues and solutions, and learn to take a long distance view of an issue bef...3941 days ago
Tools to detect synteny blocks regions among multiple genomes
...dless of whether it encompasses multiple genes, an area containing single genes, or areas devoid of known genes to be considers as synteny block as long as there is conservation at t...2601 days ago
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Bookmarks
Bioinformatics software for biologists in the genomics era
...s between the user-friendly software needed and the scripting/programming infrastructure often employed for the analysis of large numbers of genes, long genomic segments and groups o...3777 days ago
Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotat...3565 days ago
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Files
Bioinformatics definitions and applications !!!
There have been long discussion amongst several specialized/expert educator regarding bioinformatics arena, but everyone explain bioinformatics with their own view. I tried to explain it with a cartoon. Hope you all will like it.3878 days ago
- ...tools view -S -h -b -F 0x4 - | /usr/local/bin/samtools sort -@ 20 -no - temporarySam > FALCON-Unzip-Scaff.bamMapping long-reads using blasr.../home/urbe/Tools/SSpace/SSPACE-LongRead_v1-1/blasr -nproc 40 -m 1...
2142 days ago
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Pages
Bio++ : C Language libraries for your biological need
...me has been change, the biological programmers are ready to use the C++ libraries of biology. These library are designed in order to reduce the C++ long codes in a small and handy fo...3938 days ago
Monitor running jobs on Linux server
...come in handy when you need to find out if things are still running, how long they’ve been running, o...average: 0.00, 0.00, 0.00The first line tells you the current time, how long the machine has been up, how...3611 days ago
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Top-level pages
Phylogenetic for Bioinformatics
...evolutionary connections between organisms are represented graphically through phylogenetic trees. Due to the fact that evolution takes place over long periods of time that cannot b...3937 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevant...3770 days ago
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Wire posts
News
Prime Minister’s 100k Genome Project
...the next five year in England. A landmark project by british government. Genomics England will play a key role in building on the UK’s long track record as leader in med...3914 days ago
Illumina reveals first dataset of long reads
...lo technology , acquired by Illumina releases new service for long reads sequencing i.e., FastTrack Long Reads. Average read length i...data. You can also check following pages for publications on long reads and more: http://www.i...3899 days ago
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Opportunity posts
Postdoc Positions - Mammalian Transcriptome Evolution at SIB
...rds). Topics of current projects based on these data include the origins and/or evolution of protein-coding genes, alternative splicing, microRNAs, long noncoding RNAs, and dosage co...3909 days ago
Research Fellow @ Mendel laboratory
...lent microarray platforms, etc) as well as a dedicated high performance computing facility, a non-conventional workstation of GPUs and a short- and long-term storage disk. Applica...3804 days ago
- +9 more Opportunity posts
ResearchLabs posts
- Location :European Molecular Biology Laboratory (EMBL), Heidelberg, Germany. Our long-term research objective is to understand microtubule organization in living cells, with an em...
3939 days ago
- ...rch: RNA biology (microRNA, lncRNA), Stem cells, Functional genomics, Epigenomics and Cancer RNAs, especially non-coding RNAs (such as microRNA, long ncRNAs) are recently identifi...
3864 days ago
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Video
Bioinformatics -- Understanding of living systems through information science
...s, which are conserved between species. If the genome is considered as a long text, then anchors can be tho...The Sakakibara Lab uses a next-generation sequencer at Keio University, along with a cluster machine with h...3907 days ago
Genome + Epigenome = New Understanding of the Pathogens in Your Food
...Weimer describes foodborne pathogens and their proclivity for rapid genome rearrangement. The 100K Pathogen Genome Project he leads is using PacBio long-read sequencing to close geno...3863 days ago
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Bio-Scripts
- ...DBD::mysql Encode File::Copy::Recursive Perl::OSType Module::Metadata Statistics::Lite Tie::Autotie Tie::IxHash Log::Log4perl FindBin::Real Getopt::Long Catalyst::Runtime Catalyst::D...
2135 days ago
Retrieve NCBI GenBank records with a range of accession numbers
...ard (paul.stothard@gmail.com) use warnings; use strict; use Getopt::Long; use LWP::Simple; use URI::...s => 0, maxRetries => 5, help => undef ); Getopt::Long::Configure('bundling'); GetO...2907 days ago
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Polls
How long have you been a bioinformatics scientist for?
Most of the researcher have been a scientist whole life, but infact they actually started paying it with at certain time.So, how long have you been in bioinformatics domain now?3230 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...tics tools. What you always miss in bioinformatics when you will no longer working in this field?...ods that offer an alternative solution to various biological problems. A long with these updates, developer...2353 days ago
Tags
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.htmlFeatures Mapping position agnostic to alignment parameters. Consistently very high sensitivity and precision ...Tags: GraphMap, sensitive, accurate, mapper, long, error-prone, reads
2515 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. I...Tags: Ultrafast, de novo, assembly, long, noisy, reads, consensus
2342 days ago
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Comments
Comment on "China’s BGI says it can sequence a genome for just $100"
good news after long time. Illumina monoploy will end soon.1518 days ago
Comment on "Bioinformatics tools developed for Oxford Nanopore data analysis !"
Basic commands for genome assembly https://raw.githubusercontent.com/rrwick/Long-read-assembler-comparison/master/supplementary_figures/Fig_S04_commands.png1540 days ago
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