Results for "MinION. NGS"
Top-level pages
The completion of the first human genome drafts was just a...gh-throughput next generation sequencing” (HT-NGS). The decreasing genome seque...genomic sequencing projects. In the fast growing HT-NGS technologies, the main challe...3939 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bi...code and they do one thing really well. These things include changing line spacing...ascii)'#converts ascii values into character strings.perl -le '@odd = grep {$_ % 2...3619 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings The Biostrings package from...functions provided by Biostrings form the basis for many other...ocLite(c("ShortRead", "Biostrings", "IRanges", "BSgenome", "rtr...3616 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench....Partek - Commercial software for NGS, microarray, and qPCR data an...ibrary and a set of script targeted to NGS. There are modules to: clean...the University of California, BerkeleyNGS-Trex: Next Generation Sequenc...3510 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...riant calling and analysis of NGS data Supported workflows inc...ons: Supports all established NGS sequencing platforms- SOLiD,...ariants in pool or individual NGS data, reports overall p-value...daptive multiblups, LD weightings Input: PLINK format Output:...2900 days ago
- alignment: the mapping of a raw sequence read to a location within a reference genome....iple types of quality metrics, including quality of base calls, quality of mappings, and probabilities associated...
2860 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of...ges of de novo assembly of large scale NGS data by conducting family-spe...egrating with the rest of your typical NGS workflow. Metassembler 1...ler for large and complex metagenomics NGS reads, such as soil. It makes...2677 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragments. The lengths of these fragments are assumed to be sampled...2513 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl framewo...Remote-Driver - Perl Bindings to the Selenium Webdriver ser...SVG renderer in Perl famzah/langs-performance - C++ vs. Py...latypus - Write Perl bindings to non-Perl libraries with FF...and validate 'CouponCode' strings eserte/bbbike - BBBike...2480 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance q...++) http://www.cs.cmu.edu/~ckingsf/software/sailfish/ Salmon...SNP variants directly from raw NGS sequence reads by counting un...Wide Human SNP Array) from raw NGS reads (k-mer based) Software...orge.net/projects/ksnp/files/ NGS-MC Phylogeny of species base...2362 days ago
