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Results for "Oneliner"

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• • Rahul Nayak@rahul

  

  Fancy One-Liner http://userweb.eng.gla.ac.uk/umer.ijaz/bioinformatics/oneliners.html #Perl #OneLiner #Bioinformatics #Quick #Common #Tricks #CommandLine #Terminal

  Tags: Perl, OneLiner, Bioinformatics, Quick, Common, Tricks, CommandLine, Terminal

  3220 days ago

• • Jit@jit.aber

  

  Print all text after a matching string perl -ne "print unless 1 .. m(String)" #Perl #OneLiner #String #Perl #Trick

  Tags: Perl, OneLiner, String, Perl, Trick

  2966 days ago

• • Shruti Paniwala@shruti

  

  Fasta sequence length: awk '/^>/ {if (seqlen){print seqlen}; print ;seqlen=0;next; } { seqlen += length($0)}END{print seqlen}' file.fa #Length #Linux #OneLiner

  Tags: Length, Linux, OneLiner

  2650 days ago

• • Jit@jit.aber

  

  NGS onliner http://userweb.eng.gla.ac.uk/umer.ijaz/bioinformatics/subsetFASTAFASTAQ.html #OneLiner #NGS

  Tags: OneLiner, NGS

  2551 days ago

• • BioJoker@biojoker

  

  Genome Mapping #OneLiner https://bioinformaticsonline.com/snippets/view/39310/one-liner-for-reads-mapping

  Tags: OneLiner

  1819 days ago

• • Jit@jit.aber

  

  https://github.com/stephenturner/oneliners #Bash #Tutorial #OneLiner

  Tags: Bash, Tutorial, OneLiner

  1649 days ago

• • Jit@jit.aber

  

  Rename/number the multi-fasta file in ascending order. $ awk '/^>/{print ">" ++i; next}{print}' < Mix_assembly.fasta > Mix_assembly2.fasta #awk #oneliner

  Tags: awk, oneliner

  2530 days ago

• • LEGE@lege

  

  Count number of fasta sequence $ awk '/^>/ { f = !a[$0]++ } f' aaaa.fa > bbbb.fa #count #fasta #oneliner

  Tags: count, fasta, oneliner

  967 days ago

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