Results for "Peak"
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Website: http://speakboio.blogspot.com/2633 days ago
Blogs
BBTools for bioinformatician !
...----------------------------- Calculate heterozygous rate for sequence data Code: $ kmercountexact.sh in=reads.fq khist=histogram.txt peaks=peaks.txt You can examine the h...2261 days ago
Bookmarks
SIMA C++ Implementation: Simultaneous Multiple Alignment of LC/MS Peak Lists
...e c++ implementation for SIMA - Simultaneous Multiple Alignment of LC/MS Peak Lists. The package contains C...er, F.A. Hamprecht (2011). SIMA: Simultaneous Muliple Alignment of LC/MS Peak Lists, Bioinformatics 27(7):9...2345 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...a python script for analysing the mathematical distributions present in the K-mer spectra in order to determine how much content is present in each peak. This README only contains s...1972 days ago
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Top-level pages
Next generation sequencing in R or bioconductor environment
...C ChIP-Seq. chipseq The chipseq package combines a variety of HT-Seq packages to a pipeline for ChIP-Seq data analysis. Documentation BayesPeak BayesPeak is a peak calling package for...3615 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...enome tracks; allows user to compare DNA expression/binding; Input: multiple: SGR/TXT, BED, BED6, GFF; if using prealigned sequence data- use MACS peak caller: BAM, BED, SAM, ELAND...2900 days ago
Wire posts
Bio-Scripts
- # Count k-mer occurrence using Jellyfish 2.2.6 jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? sread_1.fastq sread_2.fastq # points for a histogram jellyfish histo -o 19mer_out.histo 19mer_out #Plot results using R ##load the data into dataframe19 dataframe19
2255 days ago
- ...mydocker --.---. .-. .--- / \ / ^ \ --autoConTAMPR v0.1-- Citation - autoConTAMPR: Automatic Contingency Table Analysis of Minority Peak Ranks License: Creative Comm...
1500 days ago
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SIMA C++ Implementation: Simultaneous Multiple Alignment of LC/MS Peak Lists
This is the c++ implementation for SIMA - Simultaneous Multiple Alignment of LC/MS Peak Lists. The package contains C++ source code as well as two binary files. The latter were tested under various operating systems, including Windows XP SP3 32bit, Windows Vista 32bit, Windows 2008 Server, Window...Tags: SIMA, C++, Simultaneous, Multiple, Alignment, LC/MS, Peak, Lists
2345 days ago
Comments
Comment on "Estimate Genome Size"
...ph of the histogram jellyplot.pl fastq.counts_0.histo # look at fastq.counts_0.histo.pdf and identify the approximate peak # use find_valleys.pl to help pinpoint the actual peak find_valleys.pl fastq.counts...1889 days ago
