Results for "Prediction"

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  • PolyPhen-2: Prediction of functional effects of human nsSNPs

    PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.

    Tags: Bioinformatics, PolyPhen-2, Prediction, Functional, Effects, nsSNPs

    516 days ago

  • BioGPS

    A free extensible and customizable gene annotation portal, a complete resource for learning about gene and protein function. http://biogps.org/#goto=welcome

    Tags: Bioinformatics, BioGPS, Genes, Prediction, Function

    516 days ago

  • GeneValidator - Identify problems with predicted genes

    GeneValidator helps in identifing problems with gene predictions and provide useful information extracted from analysing orthologs in BLAST databases. The results produced can be used by biocurators and researchers who need accurate gene predictions. If you would like to use GeneValidator on a f...

    Tags: Bioinformatics, Analysis, NGS, Gene, Prediction, GeneValidator, Genome

    421 days ago

  • Gene Finding and Predictions

    In this exercise, a previously annotated gene will be used to measure the accuracy of different gene finding approaches. GRAIL, GENSCAN, geneid, FGENESH, GenomeScan, GrailEXP and GENEWISE will be used to annotate the sequence. Both search by signal, content and homology (protein and cDNA seq...

    Tags: Bioinformatics, Analysis, NGS, Gene, Prediction, Finding, Genome

    420 days ago

  • Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)

    Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory and the University of Tennessee. Key features of Prodigal include: Speed: Prodigal is an extremely fast gene r...

    Tags: Bioinformatics, Analysis, Gene, Prediction, Tool, Prodigal, Mathod

    296 days ago

  • DarkHorse: a method for genome-wide prediction of horizontal gene transfer

    A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is presented. The method is quantitative, reproducible, and computationally undemanding. It can be combined with genomic signature and/or phylogenetic tree-building procedures to improve accu...

    Tags: DarkHorse, method, genome-wide, prediction, horizontal, gene, transfer, HGT

    120 days ago

  • RNAcon: web-server for the prediction and classification of non-coding RNAs

    RNAcon is a web-server for the prediction and classification of non-coding RNAs. It uses SVM-based model for the discrimination between coding and ncRNAs and RandomForest-based prediction model for the classification of ncRNAs into different classes. The structural information based graph propert...

    Tags: RNAcon, web-server, prediction, classification, non-coding, RNAs

    96 days ago