Results for "Read"
Top-level pages
...and in such manner that from the outcome we can read a definite answer, "yes" or "...amming avoids recomputing solutions that have already been computed. - The ma...nu.edu.au/~jason/hmmlinks.html•http://www.breadfan.com/markov.html•http:...3937 days ago
Best book Titles for Learning Bionformatics
...can add to our intellect more than reading a book. In books, we...es and other people’s lives. Reading can make us more intelligent, updated, imaginative. Without reading we wouldn’t know any...uman Molecular Genetics, Andrew P. Read, Tom Strachan 1999, BIOS Scie...3908 days ago
Most Commonly used Awk by Bioinformatician
...{sub(/test/, "no", $0);print}' input.txt OK now here's where to read this stuff properly explained.../awk/awk1line.txt And some nice explanations of those one-liners. After reading this you'll have a pretty...3903 days ago
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
...-viterbi-algorithm-cpg-islands-in-vb6/ Fore detail understanding of HMM read this excellent tutorial http:...Viterbi Algo at http://en.wikipedia.org/wiki/Viterbi_path For firther reading Wiki page http://en.wikipe...3815 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...Compression of DNA sequence reads in FASTQ format. Deorowicz &...FASTX-toolkit: FASTQ/A short-reads pre-processing tools Home Pa...n FM-index of the 1.2 billion reads] Readjoiner: a fast and mem...Microindel detection in short-read sequence data. Krawitz et al,...3770 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ls. http://research.nhgri.nih.gov/gasp/GemSIM Next generation sequencing read simulator http://sourceforge....ount.sourceforge.net/MetaSim A tool to generate collections of synthetic reads that reflect the diverse tax...3728 days ago
Linux for bioinformatician !!!
...o become an effective bioinformatician and computational biologist. For knowledge about Linux and their importance amongst bioinformatician plesae read this article "An introduction...3696 days ago
Next generation sequencing in R or bioconductor environment
...packages like GenomicRanges, ShortRead, Rsamtools, etc. Documentatio...t BioC-Seq packages including ShortRead, Rsamtools, rtracklayer, Geno...tion MotIV: Documentation ShortRead The ShortRead package provid...ge as well as the incorporation of read coverage information obtained...3615 days ago
Commercial and public next-gen-seq (NGS) software
...OS X.SHORE - SHORE, for Short Read, is a mapping and analysis pi...lter snps, do statistics for: reads, contigs and snps. Align/A...AST are designed to map short reads generated with the Illumina...of whole-genome shotgun microreads. ALLPATHS is a whole genome...3509 days ago
- ...for QC of fastq file: from subprocess import Popen,PIPE,call p=Popen(["fastqc","-f","fastq","-o", "/home/name/result/","/dev/stdin"],stdin=fopen("read.fastq","r") ,stdout=PIPE,stde...
3540 days ago
