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Results for "SamTool"

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• • Jitendra Narayan@admin

  

  List of popular bioinformatics software/tools

  In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.

  Tags: Bioinformatics, SamTool, SAM, BAM, IGV, BLAT, Software, Tools

  3936 days ago

• • Surabhi Chaudhary@surabhi

  

  #BAM file to fasta #conversion with #Samtool: samtools view filename.bam | \ awk '{OFS="\t"; print ">"$1"\n"$10}' - > filename.fasta

  Tags: BAM, conversion, Samtool

  2956 days ago

• • Surabhi Chaudhary@surabhi

  

  #BAM file to #fastaq #conversion with #Samtool: samtools view filename.bam | awk '{OFS="\t"; print "@"$1"\n"$10"\n+\n"$11}' >| filename.fastq

  Tags: BAM, fastaq, conversion, Samtool

  2956 days ago

• • BioStar@biostar

  

  samtool error: open: fail to open file out.bam

  samtools sort -o out.bam in.bamopen: No such file or directory[bam_sort_core] fail to open file out.bam

  Tags: samtool, error, open, out, bam, ngs

  1425 days ago