BOL: Question: samtool error: open: fail to open file out.bam

Question: Question: samtool error: open: fail to open file out.bam

BioStar
1627 days ago

Question: samtool error: open: fail to open file out.bam

samtools sort -o out.bam in.bam
open: No such file or directory
[bam_sort_core] fail to open file out.bam

Answers

It seems you are using old version of samtools

Try this first, if you on conda

conda install -c bioconda/label/cf201901 samtools

Then re-run ...

Jit 1627 days ago