Results for "Sequencing Technology"
Bio-Scripts
jitendra@jitendra-UNLOCK-INSTALL[SNP] wget https://github.com/broadins...Tools that process sequencing machine data, e.g. Illumina base calls, and detect sequencing level attributes, e.g. adapte...Collect whole genome sequencing-related metrics. Colle...2066 days ago
Bash script to download SRA file !
#We can use the sratoolkit to directly pull the sequence data (in paired FASTQ format) from the archive. fastq-dump is in the SRA toolkit. It allows directly downloading data from a particular sequencing...1550 days ago
To convert just one specific read group to fastq
# Stop script on error. set -uex # The SRR BioProject number for the sequencing data. PROJECT=PRJNA257197 # The number of datasets to subselect from the project. N=5 # Get the pro...1533 days ago
Pack a perl program with their dependencies on Ubuntu !
...genes is appended below. Biotechnology Eligibility Test (BET) Answer...nswer key is released... Biotechnology Eligibility Test (BET) Questi...etecting structural variants in sequencing data using genome-wide local...een bacteria using whole-genome sequencing (WGS) data. It is particularl...1502 days ago
- Use pen and paper the assemble it. If you are brave enough, you can try to assemble this set of reads: CAGATGTC...AGCCGGACCT TATGATCATT TCATTAGGCG AGGCGGAGCT HINT: There is NO sequencing...
1206 days ago
Install Varscan on Ubuntu / Linux !
#Varscan is a java program designed to call variants in sequencing data. It was developed at the Genome Institute at Washington University and is hosted on github. To use Varscan we s...814 days ago
