BOL

Results for "Size"

Tags

• • Jitendra Narayan@admin

  

  Check the Size of a directory & Free disk space.

  The amount of databases we bioinformatician deal are just HUGE … In such cases, we always need to check our server for free spaces etc. I planned this article to explains 2 simple commands that most bioinformatician want to know when they start using Linux / BioLinux. First: Size of a dire...

  Tags: Bioinformatics, Computational Biology, Linux, du, df, Size, File, Usage, Space, Check, Linux

  3694 days ago

• • Anjana@anjana

  

  Quick way to calculate length of multiple fasta file!!

  I am using this perl code right nowadays.#!/usr/bin/perl use warnings; use strict;open(FASTA, "<", seq.fa) or die("Can't open\n"); my %singleLineSequences; my $sequence_id; while(){ my $line = $_; chomp($line); if ($line =~ m/^>(\S+)/){ $sequence_id = $1; $s...

  Tags: Fasta, Size, Length, NGS, Sequence

  2857 days ago

• • Jit@jit.aber

  

  du -sh * will give you the size of all the directories,files etc in current directory in human readable format. #Linux #Size #Tricks #Folders #Files

  Tags: Linux, Size, Tricks, Folders, Files

  2804 days ago

• • Jit@jit.aber

  

  Find a file with certain size and delete them: $ find . -name "see-D-d-ALN_*" -size -10k -delete #Delete #Size #Linux #Tricks

  Tags: Delete, Size, Linux, Tricks

  2790 days ago

• • Marysia@marysia

  

  Is this right to say genome size with their contigs file size?

  I usually report and estimate the genome size by looking into file size of the contigs. Is this right way? 

  Tags: Genome, Size, Estimate

  2563 days ago

• • Rahul Nayak@rahul

  

  To know the size of the directory in current folder. $ du -sh * #Size #Directory #List #Space #Linux #du

  Tags: Size, Directory, List, Space, Linux, du

  2493 days ago

• • Neelam Jha@neelam

  

  Reformat you fasta sequence with size. $ seqkit seq -w 50 allGenomeContacted.fa > allGenomeContacted_final.fa #Reformat #Fasta #Size

  Tags: Reformat, Fasta, Size

  2460 days ago

• • Jit@jit.aber

  

  Estimate the genome size https://bioinformatics.uconn.edu/genome-size-estimation-tutorial/ #Genome #Size #Estimate

  Tags: Genome, Size, Estimate

  2262 days ago

• • Aaryan Lokwani@aaryan

  

  Count the contigs length in index fasta file with samtools. $ awk '{s+=$2}END{print s}' scaffolds.fasta.fai #Fasta #Index #Length #Count #Size #Samtools

  Tags: Fasta, Index, Length, Count, Size, Samtools

  2136 days ago

• • Rahul Nayak@rahul

  

  du -sh * | sort | grep "G" #List size of all the directory #Size #List #Directory #Linux

  Tags: List, Size, List, Directory, Linux

  2090 days ago

• « Previous
• 1
• 2
• Next »