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Results for "Split"

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• • Jit@jit.aber

  

  Split the text file with line number in Linux: wc -l abc.txt and then: split -l 60000 abc.txt #Split #Break #Line #Ubuntu #Linux #Tricks

  Tags: Split, Break, Line, Ubuntu, Linux, Tricks

  2771 days ago

• • Shruti Paniwala@shruti

  

  Slice on the fly with perl: my ($username, $real_name) = (split /:/, $str)[0, 4]; #Perl #PerlTrick #Split

  Tags: Perl, PerlTrick, Split

  2738 days ago

• • Jit@jit.aber

  

  splitbam: splits a BAM by chromosomes

  splitbam splits a BAM by chromosomes. Using the reference sequence dictionary (*.dict), it also creates some empty BAM files if no sam record was found for a chromosome. A pair of 'mock' SAM-Records can also be added to those empty BAMs to avoid some tools (like samtools) to crash. Usage ...

  Tags: Bioinformatics, Analysis, Assembly, Genome, Split, Reads

  2613 days ago

• • Jit@jit.aber

  

  Split the bam file by chromosome. $ bamtools split -in file.bam -reference #Split #Bam #Bamtools

  Tags: Split, Bam, Bamtools

  2613 days ago

• • Shruti Paniwala@shruti

  

  How to check if fragmented set of assembly is alright ?

  I assembled the genome, by fragmenting(split) the read data in TWO set. After assembling both sets, I am just wondering what to do the next? How to validate? Is that everything is going alright? I only use QUAST and it seems OK to me. Any other suggestions?   Note: I assembled the genome w...

  Tags: NGS, Assembly, Fragmented, Split, Reads

  2492 days ago

• • Rahul Nayak@rahul

  

  #Split #multifasta $ cat hg18.fa | awk '{ if (substr($0, 1, 1)==">") {filename=(substr($0,2) ".fa")} print $0 > filename }'

  Tags: Split, multifasta

  2208 days ago

• • Jit@jit.aber

  

  #Split the #BAM file $ /home/urbe/Tools/bamtools/bin/bamtools split -in improved3.fasta.sorted.bam -reference #bamtools

  Tags: Split, BAM, bamtools

  1955 days ago

• • Neelam Jha@neelam

  

  Multifasta 2 singlefasta cat toy.fasta| awk '{ if (substr($0, 1, 1)==">" {filename=(substr($0,2) ".fa")} print $0 > filename }' #Split #fasta #multifasta

  Tags: Split, fasta, multifasta

  1613 days ago

• • Jit@jit.aber

  

  Split the file in Linux with size. $ split --bytes=50M aaaa.fa #split #linux #size

  Tags: split, linux, size

  2486 days ago

• • Jit@jit.aber

  

  LAMSA: fast split read alignment with long approximate matches

  LAMSA (Long Approximate Matches-based Split Aligner) is a novel split alignment approach with faster speed and good ability of handling SV events. It is well-suited to align long reads (over thousands of base-pairs). LAMSA takes takes the advantage of the rareness of SVs to implement a specifi...

  Tags: LAMSA, fast, split, read, alignment, long, approximate, matches

  2173 days ago

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