Results for "Structure Variation"
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Painless package development for R
Devtools makes package development a breeze: it works with R’s existing conventions for code structure...2920 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NG...control of de novo genome assembly or identification of structural variation in a genome re-sequencing exp...2903 days ago
- Stampy is a package for the mapping of short reads from illumina sequencing machin...p-seq. Stampy excels in the mapping of reads containing that contain sequence variation relative to the reference, in...
2903 days ago
PolyPhen-2: Prediction of functional effects of human nsSNPs
PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.2901 days ago
- This histone database can be used to explore the diversity of histone proteins and thei...any organisms. The resource was established to better understand how sequence variation may affect functional and str...
2889 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of to...vering and genotyping structural variations using sequencing data. The m...ds are designed to detect shared variation using data from multiple indi...terogeneous data sets, including variations in sequencing depth, read le...
2795 days ago
Method in Comparative genomics !!
We present methods for the automatic determination of genome correspondence. The algorithms enabled the automatic ide...count by 500 genes (10% of previously annotated genes) and refining the gene structure...2730 days ago
- ... allows you to make arc diagrams of RNA secondary structures, allowing for easy comparison and overlap of two structures, rank and display basepairs...lize corresponding multiple sequence alignments and co-variation information.R4RNA is the...
2799 days ago
- Fermi is a de novo assembler with a particular focus on assembling Illumina short sequence reads from a mammal-s...consensus paradigm and uses the FM-DNA-index (FMD-index) as the key data structure...
2791 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular...nes as input, BRIG can display gene presence, absence, truncation or sequence variation in a set of complete genomes,...2770 days ago
