Results for "Syntenic"
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In comparative genome analysis work, we usually compare more than two genomes and looks for syntenic regions amongst them. In my research I used Evolution Highway (RH) http://eh-demo...3930 days ago
Tools to detect synteny blocks regions among multiple genomes
...es which occur on the same chromosome are syntenic; however, syntenic genes may or may not be "link...ny server can be used for finding regions syntenic across multiple genomes and m...y matches between individual genes within syntenic blocks. SynBrowse ( http://w...2601 days ago
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- ...ation aims to let the user examine their data at a variety of different levels of resolution, from entire maps to individual markers, and explore syntenic relationships between genomes...
2765 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchainer accepts a list of gene pairs with sequence homology along with th...2624 days ago
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Identify genome-wide synteny with LASTZ alignment
...izes FFChr1.txt.sizes chr1.chain.filter.tnet chr1.chain.filter.qnet netSyntenic chr1.chain.filter.tnet chr1.c.... -qPrefix=query. chr1.chain.filter.tnet.synnet.axt.maf Step 3: Get syntenic markers perl Maf2rawsynten...508 days ago
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DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchainer accepts a list of gene pairs with sequence homology along with their genome coordinates. Using a scoring function which accounts for the distance between neighboring genes on eac...Tags: Bioinformatics, DAGchainer, Computing, Chains, Syntenic, Genes, Genomes
2624 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
CSBFinder is a standalone Desktop java application with a graphical user interface, that can also be executed via command line. CSBFinder implements a novel methodology for the discovery, ranking, and taxonomic distribution analysis of colinear syntenic blocks (CSBs) - groups of genes that are c...Tags: CSBFinder, Discovery, colinear, syntenic, blocks, prokaryotic, genomes
2010 days ago
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Comment on "Sibelia: A comparative genomics tool"
...ed without any simplification. Boundaries correction --------------------- Algorithm of "Sibelia" depends on presence of solid k-mers within syntenic regions. If such regions con...1276 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Align Synteny - Beginning from completed or draft genomes, find shared syntenic regions and align them quickly while accounting for inversions, rearrangements, and duplications. http://www2.decipher.codes/AlignSynteny.html1964 days ago
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