Results for "Variants"
Top-level pages
List of bioinformatics open source projects/software.
...-seq. GeneTalk http://www.gene-talk.de/ Tool for filtering sequence variants in VCF files. Network for sci...ertise and knowledge exchange. Database of annotations aboute sequence variants with clinically relevant info...3748 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...mulator of Rare Varaints (srv) is a simulator for the simulation of the introduction and evolution of (rare) genetic variants. http://simupop.sourceforge.net/cookbook/simurarevariantsSUP SLINK/FastSLINK utility pr...3728 days ago
Apps for Busy Bioinformatics Researchers !!!
...sequencing data including small variations, copy number variations (CNVs), and loss of heterozygosity (LOH) events Quickly find variants of interest by filtering variants based on associated genes, fu...3532 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...inds SNPs, Indels, MNPs; reports variants based on alignment; haplotype...on: “Annotation of genetic variants in repetitive regions”...rmation of heterozygous germline variants near candidate mutations&rdqu...eleterious Annotation of genetic variants; standalone program, uses &ld...2900 days ago
- ...tools, for identifying and filtering genomics variants. bowtie: widely used, open s...es into higher confidence for calling genomic variants. RNAME: reference genome ide...tools for identifying and filtering genomics variants. Created by Heng Li, currentl...
2860 days ago
Genome Assembly Tools and Software - PART1 !!
...s reads into unitigs, maps them to the reference genome and then calls variants from the alignment to an accu...eration Sequencing Reads WhatsHap is a software for phasing genomic variants using DNA sequencing reads, a...2677 days ago
Quick next generation sequencing (NGS) terms definition
...of longer fragments. The lengths of these fragments are assumed to be sampled from a normal distribution. Therefore, in the absence of structural variants, mapping locations of the pai...2513 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...s profiles of the RNA-seq paired-end reads Software (Java) https://github.com/ChimeRScope/ChimeRScope/wiki FastGT Genotyping of known SNV/SNP variants directly from raw NGS sequenc...2362 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental investig...t the pathogenic character of new variants. Study of 10 tools on five...y: they arise due to (1) the same variants or (2) different variants fro...ional consequences of both coding variants, that is, nonsynonymous singl...2194 days ago
Frequent parameters for bioinformatics tools !
...sp; minimap2 (mapping) -a -x map-ont samtools mpileup (SNP detection) -uRI bcftools call (SNP detection) --variants-only --skip-variants indels --output-type v --pl...1277 days ago
