Results for "Variations"
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Next Generation Sequencing (NGS) Tutorials
...org/content/19/R2/R227.full.pdf ============================================== NGS data analysis pipelines Detecting and annotating genetic variations using the HugeSeq pipeline&nb...3478 days ago
- ...ations) is a suite of tools for discovering and genotyping structural variations using sequencing data. The me...e methods are adaptive and support heterogeneous data sets, including variations in sequencing depth, read len...
2789 days ago
- ...read-to-reference or genome-genome alignments is lost for structural variations in the one-dimensional views...nome browsers showing only reference coordinates. Instead, structural variations captured by long reads or ass...
2744 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
...data or annotations. However, providing a visualization that still allows for a quick and comprehensive interpretation of all important genomic variations together with various supplem...2654 days ago
Pacbio Long Reads Compatible Software and Tools
...mmercial software. Know of any other open source software for PacBio data? Email us. Software categories: De novo assembly Structural Variations Detection Reference-based al...2598 days ago
- ...athologic causes and diagnostic/therapeutic target of these diseases. But this effort also poses considerable challenges, because the structural variations and the genomes are different...
2348 days ago
PASA: Gene Structure Annotation and Analysis
...ne structure annotation consistent with the most recently available experimental sequence data. PASA also identifies and classifies all splicing variations supported by the transcript a...2312 days ago
- ...sp;SNP, CNV, HEATMAP, LINK, LINE, SCATTER, ARC, TEXT, and HISTGRAMmodules to display genome-wide genetic variations (SNPs, CNVs and chromosome re...
2288 days ago
EWAS: epigenome-wide association study software 2.0
EWAS2.0 can analyze EWAS data and identify the association between epigenetic variations and disease/phenotype. On the basis of EWAS1.0, we have added more distinctive features. EWAS2.0...2227 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
...ncluding those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer...r both the sequencing error and real genomic variations at the same time and makes it...eads to a wide range of different structural variations including nested SVs (e.g. in...2193 days ago
