3407 days ago
Painless package development for R
...t the cycle of package development. With devtools, developing a package becomes so easy that it will be your default layout whenever you’re writing a significant amount of code....2915 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as giving experience in writing one-liners. Copy the required files to your...2865 days ago
2790 days ago
Entrez Direct: E-utilities on the UNIX Command Line
...ifies the extraction of data from document summaries or other results that are returned in structured XML format. This can eliminate the need for writing custom software to answer ad...2746 days ago
2599 days ago
DendroPy: a Python library for phylogenetic computing
...hylogenetic trees and character matrices, and supports the reading and writing of phylogenetic data in a ran...cumentation . Descriptions of data formats supported for reading/writing . and more....2195 days ago
Many-to-many pairwise alignments of two sequence sets
needleall reads a set of input sequences and compares them all to one or more sequences, writing their optimal global sequence alignments to file. It uses the Needleman-Wunsch alignme...2138 days ago
Seq: A high-performance, Pythonic language for bioinformatics
...nd bioinformatics. With a Python-compatible syntax and a host of domain-specific features and optimizations, Seq makes writing high-performance genomics software as easy as writing Python code, and achieves per...1616 days ago
1552 days ago