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Results for "blast"

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  • Nishi Singh

    #Local #BLAST tutorial http://www.woolfit.net/perl/51blastall.html

    Tags: Local, BLAST

    3071 days ago

  • Radha Agarkar

    Web BLAST ftp://ftp.ncbi.nlm.nih.gov/blast/documents/web_blast.pl #BLAST #Web #Online

    Tags: BLAST, Web, Online

    2897 days ago

  • Shruti Paniwala

    Update NCBI BLAST database in your local Linux system $ update_blastdb --passive --decompress nr nt #BLAST #Updates #NT #NR #Linux

    Tags: BLAST, Updates, NT, NR, Linux

    2872 days ago

  • Shruti Paniwala

    Need help in Blastn?

    I am doing megablast of a contig against NR database, but unable to understand this -outfmt '6 qseqid staxids qstart qend sstart send qseq sseq evalue length' Can you please help me to undestand all these.

    Tags: Blastn, BLAST, Nucleotide, Alignment, Database, NR, Contig, NGS

    2867 days ago

  • Gudiya Pal

    Genome Workbench 2.10.7

    Genome Workbench 2.10.7 is here! New features include added support for local custom BLAST databases and improvements to Tree View. For the full list of features, improvements and fixes, see the release notes:https://ncbi.nlm.nih.gov/tools/gbench/releasenotes New Features BLAST Tool: added s...

    Tags: Bioinformatics, Analysis, Visualization, Genome, Workbench, BLAST, Tree View.

    2856 days ago

  • Anjana

    BLAST Ring Image Generator (BRIG)

    BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The application is available at: http://sourceforge.net/projects/brig If you have any questions or comments, post t...

    Tags: Bioinformatics, BLAST, Circular, Genome, Viewer, Ring

    2765 days ago

  • Poonam Mahapatra

    BLAST cheats heat http://www.vicbioinformatics.com/documents/Quick_Start_Guide_BLAST_to_BLAST+.pdf #BLAST #NCBI #Cheat

    Tags: BLAST, NCBI, Cheat

    2697 days ago

  • Jit

    BRIG

    BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The application is available at:http://sourceforge.net/projects/brig If you have any questions or comments, post th...

    Tags: Bioinformatics, Analysis, Assembly, Genome, BRIG, Plot, View, BLAST

    2626 days ago

  • Jit

    sequenceserver

    SequenceServer lets you rapidly set up a BLAST+ server with an intuitive user interface for use locally or over the web. More at http://sequenceserver.com.

    Tags: Bioinformatics, Analysis, BLAST, sequenceserver

    2604 days ago

  • Jit

    DIAMOND

    DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for protein-protein search as well as DNA-protein search on short reads and longer sequences including contigs and assemblies, providing a...

    Tags: Bioinformatics, Alignment, DIAMOND, BLAST, DNA, Protein

    2556 days ago

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