Results for "consensus"
Blogs
...tree that also contains the target species. For this target species, the algorithm computes nucleotide probabilities at each sequence position. Consensus sequences are then reconstruc...2521 days ago
String graph based genome assembly software and tools !
...reverse validation to remove the branches based on read coverage and paired-end information, resulting in high-quality consensus sequences of reads sharing the seeds. Such consensus sequences are then extended t...2319 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
...rs great prospects for genome assembly. Generally, assemblers are based on several different types of algorithms, such as greedy, overlap-layout-consensus (OLC), de Bruijn graph (DBG),...2311 days ago
BBTools for bioinformatician !
...complete list of flags by running the shellscript with no arguments. Dedupe will merge assemblies, but it will not produce consensus sequences or join overlapping...2261 days ago
- ...ength to report # (def=200) # # --long_reads :fasta file containing error-corrected or circular consensus (CCS) pac bio reads #...
2124 days ago
CANU genome assembly parameters !
...The most interesting ones are: *.correctedReads.fasta.gz : file containing the input sequences after correction, trim and split based on consensus evidence. *.trimmedReads.fas...1936 days ago
Bioinformatics tools for telomere to telomere assembly !
...ash; k-mer-based assembly and variant calling evaluation for improved consensus accuracy (Arang Rhie)● P...con targets from genomic samples to cluster and generate high-quality consensus sequences from HiFi reads (Ze...982 days ago
Illumina based assembly pipeline steps !
...QC (picard, SAMtools) Genome-wide and amplicon coverage QC plots (mosdepth) Choice of multiple variant calling and consensus sequence generation routes (iVar variants and consensus; default for amplicon data ||...868 days ago
