Results for "consensus"

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  • Understanding #Overlap Layout #Consensus #assembly http://www.cs.jhu.edu/~langmea/resources/lecture_notes/assembly_olc.pdf #OLC #Assembly

    Tags: Overlap, Consensus, assembly, OLC, Assembly

    319 days ago

  • DISCO : multi threaded and multiprocess distributed memory overlap-layout-consensus (OLC) metagenome assembler

    DISCO is a multi threaded and multiprocess distributed memory overlap-layout-consensus (OLC) metagenome assembler. Disco was developed as a scalable assembler to assemble large metagenomes from billions of Illumina sequencing reads of complex microbial communities. Disco was parallelized for...

    Tags: multiprocess, distributed, memory, overlap, layout, consensus, OLC, metagenome, assembler

    191 days ago

  • miniasm: very fast OLC-based de novo assembler for noisy long reads

    Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. I...

    Tags: Ultrafast, de novo, assembly, long, noisy, reads, consensus

    51 days ago

  • proovread : large-scale high-accuracy PacBio correction through iterative short read consensus

    proovread : large-scale high-accuracy PacBio correction through iterative short read consensus outperforms PacBioToCA/LSC in terms of accuracy and contiguity/sensitivity (http://dx.doi.org/10.1093/bioinformatics/btu392) is easy to install/run/configure supports various types of dat HiSeq/...

    Tags: proovread, large-scale, high-accuracy, PacBio, correction, iterative, read, consensus

    12 days ago