Public Databases for Bioinformatics !
...prediction data, enhancer prediction, motif calls /srv/scratch/$USER fast local storage not backed up,...eleted most analysis should be performed here /srv/persistent/$USER fast local storage synced nightly...1130 days ago
Bioinformatics software for biologists in the genomics era
The genome sequencing revolution is approaching a landmark figure of 1000 completely sequenced genomes. Coupled with fast-declining, per-base sequencing costs, this influx of DNA seq...3777 days ago
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PEAR: a fast and accurate Illumina Paired-End reAd mergeR
PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory. PEAR e...2941 days ago
mrFAST: Micro Read Fast Alignment Search Tool
mrFAST is a read mapper that is designed to m...ariation and segmental duplications. mrFAST maps short reads with respect...ow to choose the parameters and tune mrFAST with respect to the library s...ter is invoked. More at http://mrfast.sourceforge.net/manual.html2922 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requirement for a range of applications. Reference-free methods analyse unprocessed sequencing data witho...2870 days ago
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