Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell University provide an NGS workshop...OI: 10.1093/bioinformatics/btr441 ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using Next Ge...3478 days ago
Latest paper on comparison of mapping tools
A. Hatem, D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapping tools" BMC Bioinformatics, 14...ics.oxfordjournals.org/content/28/24/3169 Some new Mapping tool links: GSNAP http://re...3888 days ago
3654 days ago
irishgrid: Irish Grid Mapping System
Perl module for creating geographic 10km-square maps using either SVG or PNG (with GD library) output format. Originally design to map the location of objects in a 10...3409 days ago
Assembly and diploid architecture of an individual human genome via single-molecule technologies
The research work shows that it is now possible to integrate single-molecule and hi...meweb.com/sequencing-technology/researchers-combine-single-molecule-sequencing-mapping-technologies-analyze3212 days ago
2942 days ago
REAPR: a universal tool for genome assembly evaluation
REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paire...ssembly in FASTA format and paired reads mapped to the assembly in a BAM file. Mapping information such as the fragm...2942 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which...sources) Checking sequence quality, trimming, general sequence manipulation Mapping reads to a reference genome...2922 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing r...reference genome. Uniquely among current mapping tools, MOSAIK can align reads...s the only aligner to provide consistent mappings for all the generated data (...2898 days ago
2898 days ago