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Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
...ch studies, Strand NGS v3.1 includes confounding variable analysis to eliminate technical effects, including batch effects; the t-SNE plot; profile and heat-map plots of gene-body coverage; and s...2377 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
...ws users to visualize metagenomic assemblies by plotting coverage (sequencing dept...GC values of contigs, and also to annotate the plots with taxonomic information....aneously; users can choose which annotations to plot. Bins can be manually defined...2588 days ago
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orthodotter: Synteny plots (oxford grid)
...------------------- orthodotter - Plot orthologous genes on an oxfor...cies chr-name start end -toPlot <arg> : give the x and...for example set1:set2:red will plot set1 on x, set2 on y with...thodotter -f Vigne_Banane.ortho -toPlot Vigne:Banane:black:1=10,5 -x...2452 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...CPUs. The total assembly size is 105Mb; the N50 is 1.94Mb. In comparison, the HGAP3produces a 104Mb assembly with N50 1.61Mb. This dotter plot gives a global view of t...2342 days ago