Results for "quantification"
Bookmarks
"By removing the time-consuming step of read mapping, the authors reported, Sailfish able to provide quantification estimates 20–30 times faster than current methods without loss of accuracy." Tool link: http://www.cs.cmu.edu/~ckingsf/software/sailfish/3654 days ago
7th International Conference on Bioinformatics and Computational Biology (BICoB)
...r biology, multiscale modeling, pathways,gene networks. Computational Proteomics: Filtering and indexing sequence databases, Peptide quantification and identification, Genome an...3490 days ago
- +11 more Bookmarks
Pages
Genome Assembly Tools and Software - PART2 !!
...evels from RNA-Seq reads. MaLTA – Transcriptome Assembly and Quantification from Ion Torrent RNA-Seq dataMaLTA is a method for simultaneous transcriptome assembly and quantification from Ion Torrent RNA-Seq data...2677 days ago
Top-level pages
List of Bioinformatics Software Tools for Next Generation Sequencing
...microarrays (Affymetrix, Illumina) and text files Supports custom genome builds and annotation databases Performs base trimming, alignment, quantification, quality analysis, statistics...2900 days ago
Genome Assembly Tools and Software - PART1 !!
...rence genome. Rnnotator 3.5.0 – de novo Transcriptome Assembly pipeline from stranded RNA-Seq reads Comprehensive annotation and quantification of transcriptomes are outstan...2677 days ago
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Wire posts
News
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
...for DNA-, RNA- and small-RNA-Seq. UMI support in Strand NGS is end-to-end, spanning alignment to variant calling in DNA-Seq, and alignment to quantification in RNA- and small-RNA-Seq. Th...2377 days ago
- ...ency variants from liquid biopsy samples using DNA-Seq and accurate quantification of transcript-level expressio...ing like in cfDNA based cancer diagnostics, and accurate transcript quantification with RNA-Seq. Webinar Detail...
2362 days ago
Bio-Scripts
Install StringTie on ubuntu / Linux !
#StringTie is a software program to perform transcript assembly and quantification of RNAseq data. The binary distributions are available so to install we can just download this distribut...814 days ago
Tags
- CroCo is a program to detect cross contamination events in assembled transcriptomes using sequencing reads to determine the true origin of every transcripts.Such cross contaminations can be expected if several RNA-Seq experiments were prepared during the same period at the same lab, or by the sam...
Tags: CroCo, program, detect, potential, cross, contaminations, HTS, assembled, transcriptomes, expression, quantification
1936 days ago
StringTie Transcript assembly and quantification for RNA-Seq
StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optional de novo assembly step to assemble and quantitate full-length transcripts representing multiple splice variants for each...Tags: StringTie, Transcript, assembly, quantification, RNA-Seq
1417 days ago
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Comments
Comment on "Running Trinity on RNA-seq !"
Once your assembly is complete, there are several analyses you will likely want to pursue to explore aspects of the biology of your organism based on your assembled transcr...2114 days ago
Comment on "List of gene ontology software and tools"
...ilarity measure based on gene ontology provide a new view on similarity measure provides a competitive method with robust performance for quantification of semantic similarity betwee...2823 days ago
