Results for "structural and sequence variation"
Files
Bioinformatics approach to Boar Taint
Meat products obtained from intact male pigs often produce offens...genetic trait called boar taint.Androstenone and Skatole in the fat prima...47 samples belong to Norwegian Landrace (NL) and Duroc (D) pigs w...ntified QTL regions on SSC5,13, and 7 wi...e of SNP allele, functional and structura...3781 days ago
Master Thesis: Trans-membrane topology prediction through Markov based decoders
Abstract: Background/Motivation: The dearth of structural information on alpha h...rect assignment of the buried and lipid-exposed faces of the TM...ross validated test on single sequences, our trans-membrane MM,...ntire topology for 77% of the sequences in a standard dataset of 86 proteins with sup...3936 days ago
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3859 days ago
- Mostly FASTA file contain NNN characters, which can be replace by random A T G C character with this perl script. It also print the FASTA sequence name, N's counts, nucleotide count and percentage details at command prompt/standard output.
3858 days ago
- 1000 Genomes data tutorial at ASHG Structural variants presentation by Jan Korbel European Molecular Biology Laboratory (EMBL) Heidelberg Genome Biology Research Unit Reference: https://www.genome.gov/pages/research/der/1000genomesprojecttutorials/structuralvariants-jankorbel.pdf
2789 days ago
- DOWNLOAD LINK: https://github.com/BioInf-Wuerzburg/proovread/ra...09 sec[bwa_aln_core] 70778880 sequences have been processed.[bw...06 sec[bwa_aln_core] 70989574 sequences have been processed.[main] V...ads -advanceExactMatches 1 -nCandidates 1 -maxAnchorsPerPosition 1 -...
2143 days ago
Evaluation of genome assembly software based on long reads
...hundreds of microbial genomes and highly contiguous reconstructions of many dozens of plant and animal genomes, enabling new insights into evolution and sequence diversity. They have als...s, to create detailed maps of structural variations in many species. Also,...1911 days ago
- perl script analyzing codon usage in an input sequence to evaluate how efficiently it will be expressed in Anopheles gambiae. The input codon usage table derived from highly‐expressed A. gambiae genes is appended below.
1633 days ago
