Results for "transcripts"
Bookmarks
RNA-Seq De novo Assembly Using Trinity
...length splicing isoforms and to tease apart transcripts derived from paralogous genes...e RNA-seq data into the unique sequences of transcripts, often generating full-length...the graph, ultimately reporting full-length transcripts for alternatively spliced iso...2956 days ago
- ...around 5Gb for 100M reads. KisSplice is not a full-length transcriptome assembler. This means that it will output the variable regions of the transcripts, not reconstruct them entirel...
2810 days ago
- ...ng flat data formats, as well as from the GUI. J-Circos will enable biologists to better study more complex chromosomal interactions and fusion transcripts that are otherwise difficult...
2624 days ago
- ...It can draw some of the (but not all) feature types GBrowse can draw. This script should contain everything you can probably make use of (e.g. transcripts, segments, etc.) and you can...
2496 days ago
Reference-free prediction of rearrangement breakpoint reads
...rectly with no false-positive reads. Moreover, evaluation on a real prostate cancer dataset shows that the proposed method predicts more fusion transcripts correctly than previous appro...2241 days ago
SCUBAT: Scaffolding Contigs Using Blat And Transcripts
SCUBAT (Scaffolding Contigs Using BLAT And Transcripts) uses any set of transcripts to identify cases where a transcript is split over multiple genome fragments and attempts to use this information to scaffold the genome.2236 days ago
G-compass: a comparative genome browser
...c regions between human and other 12 vertebrates based on original genome alignments pursuing higher coverage (1,2). Annotations of human genes/transcripts and their ortholog informatio...2205 days ago
Scallop: reference-based transcriptome assembler for RNA-seq
...callop features its high accuracy in assembling multi-exon transcripts as well as lowly expressed transcripts. Scallop achieves this improv...from reads and paired-end reads, while also achieves both transcripts parsimony and coverage deviat...2180 days ago
RNA-seq Analysis Workshop Course Materials
...ference genome and significantly improves our ability to reconstruct transcripts. This category would obviousl...is available. In this case one would need to assemble the reads into transcripts using de novo approaches. Thi...2124 days ago
Ensembl Variation - Calculated variant consequences
...mapped to the reference genome, we identify all overlapping Ensembl transcripts. We then use a rule-based app...each allele of each variant may have a different effect in different transcripts....2055 days ago
