Results for "tree"
Top-level pages
...so applied to various other data, e.g. taxonomy trees, relationship data from meta...t, protein 3D structure alignment, phylogenetic tree construction, prediction and...ry aspects, by the construction of phylogenetic trees from the pairwise difference...3939 days ago
- ...into predefined groups. For example, an email program might attempt to classify an email as legitimate or spam. Common algorithms include decision tree learning, nearest neighbor, n...
3938 days ago
- ..."greedy" choice can be made of what looks the best solution for the moment. The most popular greedy algorithm is finding the minimal spanning tree as given by Kruskal. Linea...
3937 days ago
Phylogenetic for Bioinformatics
...epresented by a vast evolutionary tree, the Tree of Life. The Tree of Life the...uch data to build a "relationship tree" that shows the probable evol...essed in a so-called phylogenetic tree. The evolutionary connection...t.pdf How to make a phylogenetic tree: http://www.hiv.lanl.gov...3938 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ogram for the simulation of DNA sequence evolution across a phylogenetic tree http://www.rosenberglab.net/s...onte Carlo simulation of molecular sequence evolution along phylogenetic trees. http://tree.bio.ed.ac.uk/so...3728 days ago
Commercial and public next-gen-seq (NGS) software
...d or draft sequence. Released as a package providing an efficient suffix tree library, seed-and-extend alig...by progressively searching for perfect 3'-most k-mers using a DNA prefix tree. Authors are René Warr...3510 days ago
Using Interval Trees to Query Genome Annotations by Position
...ed to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-annotations-...p://hackmap.blogspot.de/2008/11/python-interval-tree.html http://en.wikipedia.org...3540 days ago
Apps for Busy Bioinformatics Researchers !!!
...ed genome browser with information on genes, transcripts,exons and SNPs. More @ https://play.google.com/store/apps/details? TimeTree: iPhone/iPad TimeTree is a public knowledge-base fo...3533 days ago
Software packages for next gen sequence analysis
...d or draft sequence. Released as a package providing an efficient suffix tree library, seed-and-extend alig...by progressively searching for perfect 3'-most k-mers using a DNA prefix tree. Authors are René Warr...3234 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...y modeling Input: FASTA protein sequence, or accession code of protein of interest Output: a report containing information from a “decision tree” and illustrated figure...2900 days ago
