Results for "writing and communication skills"
Bio-Scripts
➜ BorisTrinityAssembly /home/urbe/Tools/transrate-1.0.3-linux-x86_...ob Patro, Julian Hibberd, and Steve Kelly DESCRIPTION:...read mapping based (if --left and --right are given) 3. refere...Show some example commands with explanations ➜ BorisT...[ INFO] 2018-07-13 14:54:34 : Writing conti...2114 days ago
Installing Porechop on Ubuntu !
➜ Tools git:(master) ✗ git clone https://github.com/rrwick/Porechop.git...g_info creating porechop.egg-info writing porechop.egg-info/PKG-INFO writing dependency_links to porec...reads, trimming them from the ends and splitting...are saved to a file and st...2097 days ago
Bash script to alignment of short reads against reference genome !
bwa mem -t 40 -R '@RG\tID:K12\tSM:K12' \ E.coli_K12_MG1655.fa SR...says "align using so many threads" and also "give the reads the read group K12 and the sample name K12" #refere...ce of the file name indicates this) and converts...0413.raw.bam --- sort the BAM file, writin...1550 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
#Need to download i-adhore-3.0.01.tar.gz from https://wdiceryfd4rj...rc/bmp/CMakeFiles/bmp.dir/pnghandling.cpp.o [ 9%] Building CX...24:8: warning: ‘%x’ directive writing 1 byte into a region of size between 0 and 6 [-Wformat-overflow=] stri...sprintf_chk’ output between 8 and 26 bytes...1194 days ago
- syntax: $output = open2(\*CHLD_OUT, \*CHLD_IN, 'command arg1 arg2'); It runs a process for both reading and writing and creates a pipe to both STDIN and STD...n be used in both ways: $output = open2(my $out, my $in, 'command ar...
1154 days ago
Commandline for paired end reads simulation with BBMap !
(JitMetaENV) ➜ mixedSample git:(main) ✗ /home/urbe/Tools/bbmap/randomreads.sh ref=mixed.fa out=re.../Tools/bbmap/current/ align2.RandomReads3 build=1 ref=mixed.fa...0 gaussian Executing align2.RandomReads3 [build=1, ref=mixed.f..., maxinsert=600, gaussian] Writing refer...981 days ago
Tadpole is 250x faster than SPADes assembler !
lege@jit-Lenovo-ideapad-320-15ISK:~/Downloads/MyTools/Vir$ tadp...1 means all). NOTE: in, in2, and extra may also be comma-delim...int assembly statistics after writing contigs. Prefiltering...faster and more memory-efficient. A flo...xtend sequences to be longer, and optionall...967 days ago
