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• • Jit@jit.aber

  

  Jit bookmarked Quota synteny alignment 2722 days ago

  Typically in comparative genomics, we can identify anchors, chain them into syntenic blocks and interpret these blocks as derived from a common descent. However, when comparing two genomes undergone ancient genome duplications (plant genomes in...

  https://github.com/tanghaibao/quota-alignment
• • Jit@jit.aber

  

  Jit posted to the wire 2722 days ago

  Remove unwanted character from fasta file. $ sed -e '/^[^>]/s/[^ATGCatgc]/N/g' file.fa #IUPAC #Special #Character #Remove
• • Jit@jit.aber

  

  Jit posted to the wire 2724 days ago

  Print each command before executing? Bash script to print each command before executing. $ bash -x myscript.sh #Print #Command #Bash
• • Bulbul@bulbul

  

  Bulbul posted to the wire 2724 days ago

  https://www.r-bloggers.com/hacking-strings-with-stringi/amp/ #stringi #r #string
• • M JAGANNATH@Jagannath_bifau

  

  M JAGANNATH is now a friend with Jit 2725 days ago

  • M JAGANNATH@Jagannath_bifau

  

  • Jit@jit.aber

  
• • Jit@jit.aber

  

  Jit is now a friend with M JAGANNATH 2725 days ago

  • Jit@jit.aber

  

  • M JAGANNATH@Jagannath_bifau

  
• • Jit@jit.aber

  

  Jit bookmarked Web Apollo: a web-based genomic annotation editing platform 2725 days ago

  Web Apollo is the first instantaneous, collaborative genomic annotation editor available on the web. One of the natural consequences following from current advances in sequencing technology is that there are more and more researchers sequencing new...

  http://genomearchitect.github.io/
• • Shruti Paniwala@shruti

  

  Shruti Paniwala commented on the blog Ten International Scholarships for Indian Biotechnology and Bioinformatics Students 2726 days ago

  Prestigious "Khorana Program for Scholars" for 10 weeks http://iusstf.org/story/53-50-Khorana-Program.html
• • Jit@jit.aber

  

  Jit published a blog post List of genome announcement, notes and reporting journals 2727 days ago

  Following are the list of journals publishing pint-sized articles go by various names, such as genome reports, genome announcements, genome notes or genome letters, but will be referred to here broadly as genome reports.

  Comments

  • • Abhimanyu Singh@abhimanyu

    

    Abhimanyu Singh 2561 days ago

    The "Genomic Data" journal also publish genome announcement https://www.journals.elsevier.com/genomics-data/

  • • Jit@jit.aber

    

    Jit 2434 days ago

    Genomics data also accept draft genome assembly papers https://www.sciencedirect.com/journal/genomics-data

  • • Jit@jit.aber

    

    Jit 1478 days ago

    Computational and Structural Biotechnology Journal for bioinformatics tool publication
• • Jit@jit.aber

  

  Jit bookmarked GOLD:Genomes Online Database 2727 days ago

  GOLD:Genomes Online Database, is a World Wide Web resource for comprehensive access to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world. https://gold.jgi.doe.gov/

  https://gold.jgi.doe.gov/
• • Rahul Nayak@rahul

  

  Rahul Nayak answered the question What are the difference between "use", "import" and "require" in Perl? 2727 days ago

  The differences are many and often subtle:use only expects a bareword, require can take a bareword or an expressionuse is evaluated at compile-time, require at run-timeSo they behave differently but achieve the same goal. Then there's a list of...
• • Surabhi Chaudhary@surabhi

  

  Surabhi Chaudhary posted to the wire 2727 days ago

  New DBT announcement at http://www.dbtindia.nic.in/out-reach/latest-announcements/ #DBT #Announcement #GOI
• • Surabhi Chaudhary@surabhi

  

  Surabhi Chaudhary posted a new ad in the Opportunity RA Bioinformatics at NATIONAL INSTITUTE OF BIOMEDICAL GENOMICS, INDIA 2727 days ago
• • M JAGANNATH@Jagannath_bifau

  

  M JAGANNATH published a news post A National Workshop on "DNA Barcoding and Phylogenetics" 09 th – 12 th August, 2017 @ Andhra... 2727 days ago

  http://andhrauniversity.edu.in/webnew/admin/docs/Broucher-for-National-workshop-Aug-2017-18072017.pdf
• • Jit@jit.aber

  

  Jit commented on a bookmark MGRA: Breakpoint graphs and ancestral genome reconstructions 2728 days ago

  EAGER: efficient ancient genome reconstruction https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0918-z
• • Jit@jit.aber

  

  Jit bookmarked MGRA: Breakpoint graphs and ancestral genome reconstructions 2728 days ago

  MGRA (Multiple Genome Rearrangements and Ancestors) is a tool for reconstruction of ancestor genomes and evolutionary history of extant genomes. It takes as an input a set of genomes represented as sequences of genes (or synteny blocks) and...

  http://mgra.cblab.org/

  Comments

  • • Jit@jit.aber

    

    Jit 2728 days ago

    EAGER: efficient ancient genome reconstruction

    https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0918-z
• • Surabhi Chaudhary@surabhi

  

  Surabhi Chaudhary asked What are the difference between "use", "import" and "require" in Perl? 2728 days ago
• • Jit@jit.aber

  

  Jit bookmarked CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms 2728 days ago

  Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the amino-acid sequences of different proteins, or the nucleotide sequences of different pieces of DNA. The Basic Local Alignment Search Tool (BLAST) has revolutionized...

  https://webchem.ncbr.muni.cz/Platform/App/CrocoBLAST
• • Jit@jit.aber

  

  Jit posted to the wire 2729 days ago

  Molecular Recording https://www.youtube.com/watch?v=o8ONjPHLr6s #DNA #Recording #Store
• • Jit@jit.aber

  

  Jit posted to the wire 2729 days ago

  The gene drive bubble: New realities http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1006850 #Genes #Drive

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