I tried SyMAP but got the following error
$ ./symap []
Starting SyMAP v4.2 - Project ManagerSyMAP Version v4.2Java Version 1.8.0_91, mem: 1820MBuild 116Reading from file symap.configThe built-in MySQL server cannot run because a MySQL...
Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes, including variant calls, recombination detection, and phylogenetic trees.
Tools
Parsnp - Core-genome...