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• • Prajnya@prajnyam

  

  Prajnya is now a friend with Shruti Paniwala 1036 days ago

  • Prajnya@prajnyam

  

  • Shruti Paniwala@shruti

  
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked VCF Compare ! 1037 days ago

  compare two BWA mapping methods with the online hg18-mapped data We first operate a rapid inspection of the different BAM files using samtools flagstat. Illumina provided chr21 read mapping obtained with their GA IIx deep...

  https://wiki.bits.vib.be/index.php/NGS_Exercise.6#compare_aln_.26_mem_results_with_vcf-compare
• • Rahul Nayak@rahul

  

  Rahul Nayak commented on the bio-script Run multiple bash command in screen ! 1037 days ago

  srun --partition=compute --nodes=1 --ntasks-per-node=40 --pty bash
• • Jit@jit.aber

  

  Jit created a new bio-script Installing SEVA environment in Conda ! 1038 days ago
• • Rahul Nayak@rahul

  

  Rahul Nayak created a new bio-script Plugin skeleton for ELGG ! 1038 days ago
• • Abhi@abhinav

  

  Abhi bookmarked oGNM:Conformational dynamics based on contact topology in a coarse-grained presentation 1040 days ago

  Gaussian Network Model (GNM) is a powerful tool to sample conformational dynamics based on contact topology in a coarse-grained presentation. Here we present a method to consider protein dynamics in the presence of ‘environment’ (1). The...

  https://dyn.life.nthu.edu.tw/oGNM/oGNM.php
• • Abhi@abhinav

  

  Abhi posted to the wire 1045 days ago

  https://dst.gov.in/sites/default/files/NSM_Course_AAI_0122.pdf #AI #courses
• • Abhi@abhinav

  

  Abhi uploaded the file Prepare for Coding Interview ! 1045 days ago

  This is a comprehensive guide to prepare for your next coding interview. It's great for recent graduates and has questions and practice materials structured from traditional big tech interview formats.While it does not include the latest...
• • Abhi@abhinav

  

  Abhi bookmarked MimiLook: A Phylogenetic Workflow for Detection of Gene Acquisition in Major Orthologous Groups of... 1046 days ago

  This tool detects statistically validated events of gene acquisitions with the help of the T-REX algorithm by comparing individual gene tree with NCBI species tree. In between the steps, the workflow decides about handling paralogs, filtering...

  https://pubmed.ncbi.nlm.nih.gov/28387730/
• • Abhi@abhinav

  

  Abhi posted to the wire 1048 days ago

  Bioinformatics books https://cbirt.net/bioinformatics-books/ #Bioinformatics #Books
• • Abhi@abhinav

  

  Abhi posted a new ad in the Opportunity Three-month internship at the Wellcome Sanger Institute ! 1048 days ago
• • Abhi@abhinav

  

  Abhi bookmarked PLAR: Pipeline for lncRNA annotation from RNA-seq data 1049 days ago

  Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), and synteny). One is comparing human GENCODE genes (from GENCODE v30) to lncRNAs...

  http://www.weizmann.ac.il/Biological_Regulation/IgorUlitsky/PLAR
• • Jit@jit.aber

  

  Jit created a new bio-script FASTQ to FASTA 1050 days ago
• • Jit@jit.aber

  

  Jit bookmarked UCSC SARS-CoV-2 Genome Browser 1050 days ago

  The UCSC SARS-CoV-2 Genome Browser (https://genome.ucsc.edu/covid19.html) is an adaptation of our popular genome-browser visualization tool for this virus, containing many annotation tracks and new features, including conservation with similar...

  https://www.nature.com/articles/s41588-020-0700-8
• • Jit@jit.aber

  

  Jit created a new bio-script Compile CPP to exe 1050 days ago
• • Abhi@abhinav

  

  Abhi created a new bio-script Extract the sequences with IDs ! 1051 days ago
• • Abhi@abhinav

  

  Abhi created a new bio-script Perl script to rename the fasta file ! 1058 days ago
• • Abhi@abhinav

  

  Abhi bookmarked ChIPBase: open database for studying the transcription factor binding sites and motifs 1058 days ago

  ChIPBase v2.0 is an open database for studying the transcription factor binding sites and motifs, and decoding the transcriptional regulatory networks of lncRNAs, miRNAs, other ncRNAs and protein-coding genes from ChIP-seq data. Our database...

  https://rna.sysu.edu.cn/chipbase/
• • Abhi@abhinav

  

  Abhi bookmarked GEnView: A phylogeny based comparative genomics software to analyze the genetic environment of genes 1060 days ago

  A phylogeny based comparative genomics software to analyze the genetic environment of genes. The user can select one or several taxa and provide one or several reference protein(s). Genomes and plasmids (based on user choice) will be downloaded from...

  https://github.com/EbmeyerSt/GEnView
• • Abhi@abhinav

  

  Abhi bookmarked A guide to machine learning for biologists 1060 days ago

  Because of the increasing size and inherent complexity of biological data, there has been an increase in the application of machine learning in biology to create useful and predictive models of the underlying biological processes. All machine...

  https://www.nature.com/articles/s41580-021-00407-0

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