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- Priya Singh@priyasingh
Priya Singh is now a friend with Nishi Singh 3208 days ago
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Nishi Singh posted a new ad in the Opportunity Research Fellow Bioinformatics 3208 days ago
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- Thangapandi@Thangapandi
Thangapandi is now a friend with Nishi Singh 3208 days ago
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- Archana Malhotra@archana
Archana Malhotra posted to the wire 3211 days ago

Dynamic programming http://www.avatar.se/molbioinfo2001/dynprog/dynamic.html #Programming #Alignment #Sequence #Dynamic
- Jitendra Prajapati@jprajapati81
Jitendra Prajapati bookmarked Awesome bioinformatics pipelines ! 3213 days ago

A curated list of awesome pipeline toolkits ... https://github.com/pditommaso/awesome-pipeline

https://github.com/pditommaso/awesome-pipeline
- Jitendra Prajapati@jprajapati81
Jitendra Prajapati posted a new ad in the Opportunity Wellcome Trust/DBT India Alliance Margdarshi Fellowships 2016 3214 days ago
- Neel@neelam
Neel answered the question Human chromosome length extractor ! 3215 days ago

On linux OS you can extract human chromosome length with following command curl -s ftp://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/chromInfo.txt.gz | gunzip -c
- Jitendra Prajapati@jprajapati81
Jitendra Prajapati answered the question Human chromosome length extractor ! 3217 days ago

You can try fetchChromSizes for this purpose.
- Priya Singh@priyasingh
Priya Singh asked Human chromosome length extractor ! 3218 days ago

Is there any easiest known way to extract organism's chromosome length?
- Abhimanyu Singh@abhimanyu
Abhimanyu Singh posted to the wire 3218 days ago

#Print all line #except those #contains a letter "T" that is not immediately followed by a "H" with: grep -v 'T[^H]'
- Abhimanyu Singh@abhimanyu
Abhimanyu Singh answered the question How to count the occurance of letters in fasta file? 3218 days ago

Hmmm, I think grep can help you better grep -v '^>' genome.fasta | tr -d '\n' | sed -e 's/$.$/\1\n/g' | sort | uniq -c | sort -rn
- Abhimanyu Singh@abhimanyu
Abhimanyu Singh posted a new ad in the ResearchLabs BioinfoLab 3218 days ago
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Abhimanyu Singh posted a new ad in the ResearchLabs Kamaleshwar Singh Lab 3218 days ago
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Abhimanyu Singh posted a new ad in the Opportunity SRF at NRCPB, New Deslhi 3218 days ago
- Neel@neelam
Neel answered the question Whar are N50 and L50 of a contig assembly file? How to calculate it? 3219 days ago

from a Broad Institute site: "N50 is a statistical measure of average length of a set of sequences. It is used widely in genomics, especially in reference to contig or supercontig lengths within a draft assembly. Given a set of sequences of...
- Poonam Mahapatra@poonam
Poonam Mahapatra asked How to count the occurance of letters in fasta file? 3220 days ago

I received a new genome to annotated. I need your help to quickly count the occurance of all the letters in fasta file.
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary bookmarked RNA-Seq De novo Assembly Using Trinity 3220 days ago

Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules:...

https://github.com/trinityrnaseq/trinityrnaseq/wiki
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary posted to the wire 3220 days ago

#BAM file to #fastaq #conversion with #Samtool: samtools view filename.bam | awk '{OFS="\t"; print "@"$1"\n"$10"\n+\n"$11}' >| filename.fastq

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