You’re determined students, passionate teachers, and inspired creators of everything we know! Yet, all the researchers we spoke with over the past year uncovered the same reality:
Despite the degrees you’ve earned, the effort and...
gget is a free, open-source command-line tool and Python package that enables efficient querying of genomic databases. gget consists of a collection of separate but interoperable modules, each designed to facilitate one type of...
Upset plots are a type of visualization used to analyze the intersection of sets or categories. They are particularly useful for displaying data with multiple categories and analyzing their overlaps.
In an upset plot, each row represents a category...
Geospatial data is becoming increasingly important in many fields, including urban planning, environmental science, public health, and more. These tools can help you work with data from a variety of sources, including satellite imagery, GPS data,...
Unique k-mers and distinct k-mers are related concepts in bioinformatics, specifically in the context of analyzing DNA or RNA sequences.
Unique k-mers: These are k-mers (short sequences of DNA or RNA of length k) that occur only once in a given...
Glittr is a curated list of bioinformatics training material.All material is:
In a GitHub or GitLab repository
Free to use
Written in markdown or similar
NOTE: This list of courses is selected only based on the above criteria.There...
Benchmarking a Perl module involves measuring the performance of the module in terms of its execution time and memory usage. This can be done using the Perl Benchmark module, which provides a simple and standardized way to measure and compare the...
Phred scaling is a widely used system for representing the quality scores of sequencing reads. It is used to quantify the probability of an error in each base call in a sequencing read. Here is a quick guide to Phred scaling:
Phred quality...
Short-read assembly is the process of constructing a genome sequence from a large number of short sequencing reads. SPAdes (St. Petersburg genome assembler) is a popular software tool for short-read assembly. Here are the general steps for...
There are several tools available for short read simulators that are widely used in bioinformatics research. Here are some of them:
ART: The ART (short for Artificial Read Simulator) is a popular tool for generating synthetic reads based on...
Installing in CONDA env
You can check using which perl - it should give you the perl that's located within your conda environment. In this case, it should install things into your conda-directory.
When you install packages via cpan...