A Quick Guide to Organizing Computational Biology Projects
http://www.ploscollections.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1000424
The purpose of this article is to describe one good strategy for carrying out computational experiments....
Python Educational Material
Beginners: Non-programmer’s tutorial for Python by Josh Cogliati (PDF)
Beginners: Python & programming trainig with Rosalind
Beginners: Learn programming with Python...
Berkeley provide some of the excellent and well written tutorials on bioinformatics find more at http://ib.berkeley.edu/courses/ib200a/IB200A_SyllabusHandouts.shtml
There are long list of software, but following listed tools will be useful for bacterial based analysis work.
Short read alignment
•bwa – external link:http://bio-bwa.sourceforge.net
•samtools – external...
Once you are on ftp command line. You can transfer your data and other stuff onto the server.
For more ftp comman line detail visit http://www.tldp.org/HOWTO/FTP-3.html